RNA id: TCONS_00073364


Basic Information

Item Value
RNA id TCONS_00073364
length 2604
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_037280
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34089156 ~ 34113209 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGGCACGGTATATGCTTGGTTTCGGTGTTTTGTGTCTGTTGACATGGGCTGTTTACGTGTCAGAAAGCAGCCCGACCGATAAACAGGCTAAACTCAGACTGATGTCCGTACGACGAGCAAGACAAAACAAATCCCGACAGGGTCAGATCATTAAAACACGTGCTTCTTCTACATGGATCAATGATAAACGCCAACAGATGCAGGGAGACGAAGGTGTACAATTTAGAAGGAATGTCCAATCCAGAAAGGTCTTGGCACAAAGGAGACCAGCACAGGGTGGGACAAGGAATCCAATCCAGCAAGATGATGGAACACCTGGAGCCAGGGCCAGAGTGTCCCGCATGCCAAGCAGTGCTGGTTCTCCAAACCTACTGGCGTCATTTGCAGGGAAAAACCGCCTACTGGTTATTTCCGCACCTCACGACTCTGATGGCTACTACAGATTGATGATGAGTCTGCTTAAACCTGAGGTTTACTGTGAGTTGGCTGAGCGGCACGTGCACCAGATTGTCATGTTCCATCAGGAAGGAGAGTTGGGTGGGAAAATCAGACGCATTACTAATGAAGGGAAAGTGATGGAAGAGCCATTAGATACTGCTCTCATTCCCAGGCTCATGACCTTTCTAAAATTAGAGAAAGGAAAGTTTGGGATGGTTCTTCTTAAGAAGACGCTTCAGGTGGAGGAACGGTATCCATACCCGGTCCGACTGGAAGCAATGTATGAAGTTATCGACCAGTCACCTATGCGCAAAATGGAAAAAGTACGGCAGAAAGGCTTTGTGCAGAAGTGTAAAGGGGCTGGGGTGGAGGGTCAGGTGGTTGAGGGTGTCCTGACCACTGATTCCCAGGTGGACCCACCAACAGAAAGGAGAAAAGAGATTCGGAAACCCATTCGAAGACCAACAACAACTACCACTCCAGCTCCAACAAGACCAACAACTACCACCACCACTACCAAAGCAACTACTACCACCACAACACGTCCCCCAACTACAACCCGATCTACCACCAccacaacaacaacgacaacaacaacaacgcggccaaccacaacaacaacacgGACCACCACCACTCCAAGGACTACCAGAGCTAATACTACCCCTCAATGGATCCCAGCCCACAAGACCACTGCCGAACCTTACTATTACAATCGTAGGGACAGATACCAGACCACCTCACCCCCAACTGACTCAGCAAGATACAGAGACAACCACACTTCTAAAAAAGAATACAACCATAGACATACCAACACTATACCAACACAACACAAGCCAACTAAAGTAAGGCCTACAAAGAAAAAGAATGGCGATAAAGATATTAGCAACGCGTATGAGGAGAAATATGACGTAGGTGTGCCTACCGATGCCTATCctgaagaaaaagaggaagaaatCGTGCCCACCAAAAGAGGCAAGGGCAAAAcagataaaaagaagaaaaaggacAAGACAGATAAGCTGTCTAAAAAGGACAAAgcagagaggagaggaaaagatGGAAAGGGTGGTAAGAAAAATGGAAAGAAAGTTCCAAAGATTCTTGAGAAAGAAGATTATCAGAAACCAACAAAAAGACCACCACCGCCACCGCCACCTAAAGGAACTCTGGCAACCTTTTTGGACTATTTTGAAAGCAGGAGGAGATTAATTttGATCACCTCTCCAACAGAGGAGAACAGCATGTATATTCAGCAGAGGGATGAATACTTGGAGCACGTGTGTGAAATGGCAATCAGGAAAGTAACCATCATCACCATCTTTGGCACATTTAGGAATAGCACCATGAAAATTGATCATTACCAGCTTGAGAAGGACAAGCCCATGAAAGGTCTGAGACAGGAGGATTTGGAGAACCAGGATCTCATCATGGAGCTGAGGAAAGAGTACGGAATGACCTACAACGATTTCTACGTGGTCCTCACAGATCTGGACATGAAGGCGAAGCAATACTATGAAGTGCCAATTGCAATGAAGGCTGTGTTCGACTACATCGACACGTTTTCATCACGTATCAGAGAGATGGAGCAACAGAAGAGGGATGGGGTGACGTGCAAAAAAGAAGACAAGCCCAGATCATTGGAGAACTTCCTTTCCAGATTCCGCTGGAGACGCAGGTTGTTTGTCATATCTGCACCAAACGATGAGGAATGGGCCTATCAGCAACAGCTTTATGCACTGACCAGTCAGGCCTGCAACCTGGGTCTTCGTCATGTGTCCGTGCTGAAGCTGGTCGGTACAGACCTGTTAGACATGGGAGGAGTGTTAGAGCTTTACCCCATCAACGGTAGTGCAACGGTGGAGCGTGAGGGTATCTCTGCCACTCTAGTAAGAGACATCAGAAACTACTTCCAGATCAGCCCCGAGTACTTTTCCATGCTGCTGGTTGGAAAAGACGGAAATGTCAAATCCTGGTACCCGTCACCCATGTGGTCCATGGCCATCATCTATGACCTGATCGACTCCATGCAGCTCCGCAGACAGGAAATGGCCATCCAGCAGTCTCTAGGTATGCGCTGCCCTGAGGATGAGTACGGTGGATATGGTTATCATCATCATGAGGGTTACCAGGAAGGTTATCATCAGGGTTATGGATATTAG

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0003073 regulation of systemic arterial blood pressure biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-56 Acts upstream of or within regulation of systemic arterial blood pressure and somitogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including cardiovascular system; mesonephric duct; nervous system; pleuroperitoneal region; and solid lens vesicle. Used to study pulmonary hypertension. Orthologous to human CCDC80 (coiled-coil domain containing 80).

Ensembl:

ensembl_id ENSDART00000000005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075163 lncRNA upstream 80590 33997269 ~ 34008566 (+) False XLOC_037279
TCONS_00073363 lncRNA upstream 82318 33997301 ~ 34006838 (+) True XLOC_037279
TCONS_00075162 lncRNA upstream 83574 33997142 ~ 34005582 (+) False XLOC_037279
TCONS_00075160 lncRNA upstream 324979 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA upstream 336751 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00073370 lncRNA downstream 108810 34222019 ~ 34226959 (+) True XLOC_037283
TCONS_00075164 lncRNA downstream 173545 34286754 ~ 34296124 (+) True XLOC_037285
TCONS_00074919 lncRNA downstream 257651 34370860 ~ 34378332 (+) False XLOC_037287
TCONS_00074920 lncRNA downstream 258398 34371607 ~ 34378100 (+) False XLOC_037287
TCONS_00074921 lncRNA downstream 258927 34372136 ~ 34373543 (+) False XLOC_037287
TCONS_00073360 mRNA upstream 227032 33788389 ~ 33862124 (+) False XLOC_037278
TCONS_00073361 mRNA upstream 227663 33788626 ~ 33861493 (+) False XLOC_037278
TCONS_00073359 mRNA upstream 289400 33783061 ~ 33799756 (+) True XLOC_037277
TCONS_00073358 mRNA upstream 662121 33423170 ~ 33427035 (+) True XLOC_037275
TCONS_00073357 mRNA upstream 669835 33417969 ~ 33419321 (+) True XLOC_037274
TCONS_00073365 mRNA downstream 13796 34127005 ~ 34147996 (+) False XLOC_037281
TCONS_00073366 mRNA downstream 13797 34127006 ~ 34147996 (+) True XLOC_037281
TCONS_00073367 mRNA downstream 35505 34148714 ~ 34162374 (+) False XLOC_037282
TCONS_00073368 mRNA downstream 38158 34151367 ~ 34162047 (+) True XLOC_037282
TCONS_00073369 mRNA downstream 108788 34221997 ~ 34227472 (+) False XLOC_037283
TCONS_00073362 other upstream 252686 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073351 other upstream 843401 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073341 other upstream 907804 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073333 other upstream 1006975 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 1437084 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073383 other downstream 312519 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 312566 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073386 other downstream 313082 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073390 other downstream 677541 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073397 other downstream 856241 34969450 ~ 34969567 (+) True XLOC_037296

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_03123137_03137452.mRNA True 4052 mRNA 0.41 9 CI01000009 3122116 ~ 3138311 (+)