RNA id: TU40758


Basic Information

Item Value
RNA id TU40758
length 3221
lncRNA type read_through
GC content 0.36
exon number 2
gene id LOC120555801
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28447956 ~ 28550000 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaataaaaaaaaaaaaaaaaaaaaatcaggggTCTAACCAAAGTTCAAAGACGATTAAAAAGTTTTcattaggagaaaaacaaatcatttaaaggtcctatgacatggtgctctttggatgcttttatatagaccttagtggtcccctaatactatatctgaagtctctctcccgaaattcagccttggtgcagaattacagccactagagccagtcccacaatgagctttccttagtatgtgccatttctgtgtctgtagctattgaggaggagagagggggggcaaggtggagagggGTGTGGccccccttatgacctcataaggagaaagattccagatcggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcgccatttctagaacctgggggaccataggcaggctgggggaacgcatatttatgttaaaaaacctcataaagtgaaattgtcatgccatgggacctttaagtataaTGGCATCATGCATATTTCATCAAATCATAAAGGCTGTATTTATAAAGAATGGTAATACTGTACTAGGGATAACAATGAACCCCTTGAGCAGGGTTGCTGTCCCACCAAGGACAATACATTTAGTAGCAATGTTTGCCAAGTTAAATTTACCTCAAATTACTTGCAGaccttttctcttcttcttcaggtTGATCGTTGTAAAACAGATCTTATTTTCACAGTAATTATTTTCTAACGGATACATTTAAACTGAAAAGTATTATTGTACATTTGCAGATTCAACACACAATGCATATTCATTTCTAATGTTCTTGATTGCACTGTATAACTCTGTTTTTCATAGAGCAGAGTTATAGATAAAGTAGCTATTACACGGACGACTGTGCTTAACCGGCTGTAAAGGTGATAATATCCTCAGTCACCACTGTGCGAGAATAGTGCTGCTTCTGACTCCACATGATCTTAATGCTTTGAACCACCTGTCTGATATTTCCATCCGTAGATGGCAAACTGTTGTCTGATTACTTCATTTCCATACCATAAGCCTTGATTGATGTTATACCACCAGTCTGCCCTCTCCAGACATCAGCTATtccatatacattttttttattaattcactGGCAGGTAGTCTTTCAAACCTGGTTCTGACCATTTGTGTTATCATGTACTTGGCTTGCATGTTGTAGTCTAATGAgtttatttaaaatgcaaatattCATTAGTCTTTATTTAGGTGTACAATATAATCAGTGTTTCTGGCCATGTATAAAGTTGAGACTCCAGTTTAGAGAGTAGAGGATCAACAGGCAGGATGCTTTTAATTCCAGTGCTCTGACTGTAATCTGAACATCACTTTGTCCTTTGTTTACATCATTACGGCATCAGAAGGAGGCTCTCCATTTAATGATGCCATCAGCTTGTAATGTGGATAAAGACTATTCCTGTAAGCACTTTGTTTTTGGAGCAGTTCCGCTGTGAATCCATCAGAAATGTTTGTCTTTAAATCTGACATGGTTTTTAAGGCTGTACCTGGTGGTGTTAGAATAGTTTTGCTAAAGTAAAAGATAGCCAGCTCTGAGttgatattttctttctctaCATTTATCCCAAACATATCTGCATTTTCTCAcctgtttgttttaaatacacTGTGGATATAAAAGGTCTTGCCACAGCAGAGCTtactgtgtgtgatgttgttAAATCAGCGGGCATTTGCATATTGTCTGCTTTGGTCCTTGTACACACTCAGAATTCATGCTGTGAAAAACCAGAAAGCATTAACTATCCAGGCTGAGACTTCTGATGTAGGTACTGAGAGATGCATCGATACAAATTTATCACTGCCAACACAGATTGTGTTTATTAGATTTGAACATCCTAGCAAGATCTGCTTTGTTAACAACAATGTATAGTTTGAGATTGCTTGACATAAATGAGTGTTTGAATATGATGCTTTCTCTATTTTTTCATCACATCTTTAGTTTAAGTTCCCAAAACGTATGGAAACTGTAAAGTTTTAGCCAGGTATCTCCCACACTGCTGTTGTTATCGGTGCATCCCAACCATACAGAAAATGAAGGGCTTCTGGTCTGATTTGATTTTCACCTCAATGTATGCATAACATTTTGCATTAGAACTCACTGATATATAGatatgtatgtaaatgtgttAATGTTTCATATTGAATGTCTTCCTGTTACTGTTCTATGCTGTGTGTACTTTTGAAGCATTTGAAAGGCAGAATTGAGAGATGTGAATTGTAAAAGTTTGTAATCTGACGATCCGGTGAACTTGGAAAACAAAAACCCAAACTTAGTTGATTCCTAAAGCACACTCACTATtagatttaattattattaaaccTTTCTTCAATAGAATTTAATATAATGCTTGTTAAATAGGTAATACCCCTAACTGTGATCATTTGTCTCAATTGATGTTGCAGAAGATATTGTGGAAGTTTCCTGAAATGAATACATTGGAAACCCCATGTGCACAAATATACTGTAGGTGTACACTGCCTTTCTAAAATATGGGTTTACTTAGGGACAAGTTGCAGTGATGGAAGAATGCAAGTGCTTGTTTGTTAGGAAATAATGTGATGATGGATACAAATATGTGGACTCTGAACAATGACAAAGGGACATATATGGGCAAGATAGGTAACATGATACCTTTTTGCATGAGCGACTTATGATTGTAGCTGATACTGAGCAGACCAAGCAGGTCTAATGTACTTTGAGTGAGAACAAGGAAAGGGGCAAGGTTGCAagtcactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaaagctTCTCCTGTAAATAGCTACTAACTAAGATGTTTTCCATTCTTTGTCCCATTTTACTGCTTTTTCCTCACGGTGGAAAGCCTAAATCACCTCTGTCTTATTTATAACCATTGTATGGCACTGCATTTATTTCAGTGAGTTTTTGGTTTTTGTAAATCCTATGCAACCCCTTATGTGTTCTAACATCTGCAGTCATCTGACTGTGTTATTCTGCATTGTGTGCcgtcttttattttctcttttgcaGTGAACGTTAACCATTTGCATGTACAGCAGTAACATACCTTTATTTTTACGTTTAGTTTTTAATGTAACCTGTATTTTGTTAAAACAATGGTTAATAAAGGAATTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40721 lncRNA downstream 55438 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 222509 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 388788 28046759 ~ 28059168 (-) True dbndd1
TU40650 lncRNA downstream 409749 28037134 ~ 28038207 (-) True G30586
TU40635 lncRNA downstream 428881 28012058 ~ 28019075 (-) False G30579
TU40784 lncRNA upstream 118598 28668598 ~ 28668964 (-) True G30691
TU40860 lncRNA upstream 590354 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 667855 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 760550 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 763958 29313958 ~ 29314646 (-) False prrg4
XM_039794039.1 mRNA downstream 27700 28239530 ~ 28420256 (-) False gse1
XM_039794038.1 mRNA downstream 27701 28239530 ~ 28420255 (-) True gse1
XM_039794037.1 mRNA downstream 220418 28225624 ~ 28227538 (-) True LOC120555377
XM_039794036.1 mRNA downstream 220430 28225624 ~ 28227526 (-) False LOC120555377
XM_039795569.1 mRNA downstream 223750 28205726 ~ 28224206 (-) True dusp22a
XM_039795058.1 mRNA upstream 220001 28770001 ~ 28846965 (-) False mafa
XM_039795059.1 mRNA upstream 225975 28775975 ~ 28846965 (-) False mafa
XM_039795060.1 mRNA upstream 278634 28828634 ~ 28846965 (-) False mafa
XM_039795884.1 mRNA upstream 366661 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA upstream 366661 28916661 ~ 28935996 (-) True ppfibp2a
TU40633 other downstream 445486 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 567743 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 676146 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 814334 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 1131798 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 119191 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 220001 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 220001 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 225975 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 707978 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile