RNA id: TU40784


Basic Information

Item Value
RNA id TU40784
length 367
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G30691
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28668598 ~ 28668964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caatgatccaaaacataaagcaaaatctacaatggaatggttcacaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaacgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggcaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcactacaaagtattaacttaagggggctgaataattttgcacgcccaatatttcagttttttatttgtttaaaaggtttgaaatatccaat

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40758 lncRNA downstream 118598 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 276080 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 443151 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 609430 28046759 ~ 28059168 (-) True dbndd1
TU40650 lncRNA downstream 630391 28037134 ~ 28038207 (-) True G30586
TU40860 lncRNA upstream 471390 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 548891 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 641586 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 644994 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 644994 29313958 ~ 29314646 (-) False prrg4
XM_039794832.1 mRNA downstream 161357 28478868 ~ 28507241 (-) True LOC120555776
XM_039794114.1 mRNA downstream 198955 28466025 ~ 28469643 (-) True cenpn
XM_039794880.1 mRNA downstream 203820 28457400 ~ 28464778 (-) True atmin
XM_039794885.1 mRNA downstream 215398 28451122 ~ 28453200 (-) False LOC120555801
XM_039794039.1 mRNA downstream 248342 28239530 ~ 28420256 (-) False gse1
XM_039795058.1 mRNA upstream 101037 28770001 ~ 28846965 (-) False mafa
XM_039795059.1 mRNA upstream 107011 28775975 ~ 28846965 (-) False mafa
XM_039795060.1 mRNA upstream 159670 28828634 ~ 28846965 (-) False mafa
XM_039795884.1 mRNA upstream 247697 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA upstream 247697 28916661 ~ 28935996 (-) True ppfibp2a
TU40633 other downstream 666128 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 788385 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 896788 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 1034976 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 1352440 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 227 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 101037 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 101037 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 107011 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 589014 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile