RNA id: TU40786


Basic Information

Item Value
RNA id TU40786
length 678
RNA type TUCP
GC content 0.43
exon number 1
gene id G30693
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28669191 ~ 28669868 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatagaatccagctgtgtgtaatcaagtctccgtataaatgcacctgctctgtgatagtctcagaggtccgtgtaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtggagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactacaaatctacgaagacccggccgtccctctaaactttcagctcatacaatgagaaaacgaatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatactgcacaaatctggcctttatggaagagtggcaagaaaaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccaaaagccacctgggagacacaccaaacatgtggaagaaggtgctgtggtcagatgaaaccaaaatcgaactttttggcaacaatgcaaaacgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40784 lncRNA downstream 227 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 119191 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 276673 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 443744 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 610023 28046759 ~ 28059168 (-) True dbndd1
TU40860 lncRNA upstream 470486 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 547987 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 640682 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 644090 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 644090 29313958 ~ 29314646 (-) False prrg4
XM_039794832.1 mRNA downstream 161950 28478868 ~ 28507241 (-) True LOC120555776
XM_039794114.1 mRNA downstream 199548 28466025 ~ 28469643 (-) True cenpn
XM_039794880.1 mRNA downstream 204413 28457400 ~ 28464778 (-) True atmin
XM_039794885.1 mRNA downstream 215991 28451122 ~ 28453200 (-) False LOC120555801
XM_039794039.1 mRNA downstream 248935 28239530 ~ 28420256 (-) False gse1
XM_039795058.1 mRNA upstream 100133 28770001 ~ 28846965 (-) False mafa
XM_039795059.1 mRNA upstream 106107 28775975 ~ 28846965 (-) False mafa
XM_039795060.1 mRNA upstream 158766 28828634 ~ 28846965 (-) False mafa
XM_039795884.1 mRNA upstream 246793 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA upstream 246793 28916661 ~ 28935996 (-) True ppfibp2a
TU40633 other downstream 666721 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 788978 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 897381 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 1035569 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 1353033 27310171 ~ 27316158 (-) True G30319
XR_005638770.1 other upstream 100133 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 100133 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 106107 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 588110 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 732886 29402754 ~ 29461236 (-) False elp4

Expression Profile