RNA id: TU40860


Basic Information

Item Value
RNA id TU40860
length 285
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G30759
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29140354 ~ 29140638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACTCCCTTGATTTGTttttagaagaagaagatttatttatttatattaggacaatgcacattaatcaacatttctgtaaatgcgccagtgttagccagacggctaattttcaactgcagtcctagttgcatgcaggtttttatggtgggaagaaaccggagcgcccggaggaaacccacgcaagcacagggagaacatgcaaattccacacagaaaggcctgggacgacctgggttcgaacccagaaccttcttgctgtgaggcagaagtgctaaccactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40784 lncRNA downstream 471390 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 590354 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 747836 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 914907 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 1081186 28046759 ~ 28059168 (-) True dbndd1
TU40902 lncRNA upstream 77217 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 169912 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 173320 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 173320 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA upstream 173320 29313958 ~ 29314646 (-) False prrg4
XM_039794118.1 mRNA downstream 4293 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA downstream 4592 29126788 ~ 29135762 (-) False LOC120555430
XM_039795790.1 mRNA downstream 75797 28985561 ~ 29064557 (-) True spon1a
XM_039794057.1 mRNA downstream 176681 28941368 ~ 28963673 (-) True syt9a
XM_039794058.1 mRNA downstream 176681 28945802 ~ 28963673 (-) False syt9a
XM_039794163.1 mRNA upstream 14334 29154972 ~ 29216343 (-) True kiaa1549lb
XM_039794164.1 mRNA upstream 15276 29155914 ~ 29216732 (-) False kiaa1549lb
XM_039794168.1 mRNA upstream 77215 29217853 ~ 29269183 (-) False LOC120555471
XM_039794167.1 mRNA upstream 77215 29217853 ~ 29269183 (-) False LOC120555471
XM_039794166.1 mRNA upstream 77215 29217853 ~ 29269183 (-) False LOC120555471
XR_005638770.1 other downstream 293389 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 293389 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 293389 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 470486 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 1137884 28001640 ~ 28002470 (-) True G30577
TU40901 other upstream 117340 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 262116 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1390113 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3750861 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4201609 33342247 ~ 33348090 (-) True wdr76

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002021 True 3000 mRNA 0.43 7 NC_007112.7 25897231 ~ 25911901 (-)