RNA id: TU40901


Basic Information

Item Value
RNA id TU40901
length 737
RNA type TUCP
GC content 0.52
exon number 2
gene id LOC120555471
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29217853 ~ 29269183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGGACATGTTAGAGGCTGGCAGGGCCGTGGAACAACACGTCTATACGGGGTAACGGACACACTTTCAGAGATGGGCTACTTCGCCCAAAGAGGAAGGAGACGAATTTGAACTTTGTAGCTACAACCAGGGCTCGATGTGGTGTTTCTGGACGCTCATATGAAAGAGTTActtaatgtttaaaatgtggGAGATGGTGGCGTTACCGAGAGCGAGCTCTCCCTTCCTGTCGTCTAGGACAAGATGGCAGCAATGCAGGCGAACTGTGCATGGTATGGATTTATGAGTCCATAACATGTTCAGAGAAGCCCTGGATTATACTTATAGTGACTCTATGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACACATTTATCAAACCCAGACAAGTGCCTTTAGCAGTGTGAAGAAACTCAAAGTCGAGCCCAGCAGCTGTGTGTACCATGAGAGGGCACACCTGTGGACTTATCTGAACAGCAGAACCCTTGGCATTGTGCACCTAACGAAACAAGCCCACTCGTTTGTGAACCGAGACTTGGCAGTGGGCGTGAAAGTGCGTGGAGGACAAGAGTACCCTGTGCAGACAGTGGTGGTGCGTGGTGTACAGAGACAGCAGCCCTgtaaaagagaaggaggaggaggaggaggacaaggCCCGGCTGCGGCCCAGCAGCGACAGGACGCAGGGATTGTCCACTTGCAGGGcaaggagcagcagcagacagacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40902 lncRNA downstream 20552 29217855 ~ 29237426 (-) False LOC120555471
TU40860 lncRNA downstream 117340 29140354 ~ 29140638 (-) True G30759
TU40784 lncRNA downstream 589014 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 707978 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 865460 28342700 ~ 28392518 (-) True G30644
TU40938 lncRNA upstream 41386 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 44794 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 44794 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA upstream 44794 29313958 ~ 29314646 (-) False prrg4
TU41003 lncRNA upstream 117593 29386757 ~ 29396683 (-) False G30852
XM_039794164.1 mRNA downstream 41246 29155914 ~ 29216732 (-) False kiaa1549lb
XM_039794163.1 mRNA downstream 41635 29154972 ~ 29216343 (-) True kiaa1549lb
XM_039794118.1 mRNA downstream 121917 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA downstream 122216 29126788 ~ 29135762 (-) False LOC120555430
XM_039795790.1 mRNA downstream 193421 28985561 ~ 29064557 (-) True spon1a
XM_039795045.1 mRNA upstream 15142 29284306 ~ 29294681 (-) True depdc7a
XM_039795365.1 mRNA upstream 30191 29299355 ~ 29309999 (-) True qser1
XM_039795364.1 mRNA upstream 30191 29299355 ~ 29309579 (-) False qser1
XM_039796141.1 mRNA upstream 42028 29311192 ~ 29314709 (-) True prrg4
XM_039794524.1 mRNA upstream 48925 29318089 ~ 29326464 (-) True eif3m
XR_005638770.1 other downstream 411013 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 411013 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 411013 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 588110 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 1255508 28001640 ~ 28002470 (-) True G30577
XR_005638738.1 other upstream 133590 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1261587 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3622335 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4073083 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 4169299 33438463 ~ 33449061 (-) False znf710b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU126682 True 248 lncRNA 0.39 1 CI01000020 347430 ~ 347677 (-)
eurasian perch (Perca fluviatilis) TU126682 True 1081 lncRNA 0.42 2 NC_053120.1 7233146 ~ 7235719 (+)
striped catfish (Pangasianodon hypophthalmus) TU126682 False 698 TUCP 0.54 2 NC_047600.1 29702152 ~ 29713992 (-)
tiger barb (Puntius tetrazona) TU184928 False 698 TUCP 0.50 2 NC_056716.1 9544977 ~ 9552382 (-)