RNA id: XM_039794168.1


Basic Information

Item Value
RNA id XM_039794168.1
length 8693
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC120555471
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29217853 ~ 29269183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTGCTTGCAGCCAGAGAAAAGGGACATGTTAGAGGCTGGCAGGGCCGTGGAACAACACGTCTATACGGGGTAACGGACACACTTTCAGAGATGGGCTACTTCGCCCAAAGAGGAAGGAGACGAATTTGAACTTTGTAGCTACAACCAGGGCTCGATGTGGTGTTTCTGGACGCTCATATGAAAGAGTTActtaatgtttaaaatgtggGAGATGGTGGCGTTACCGAGAGCGAGCTCTCCCTTCCTGTCGTCTAGGACAAGATGGCAGCAATGCAGGCGAACTGTGCATGGTATGGATTTATGAGTCCATAACATGTTCAGAGAAGCCCTGGATTATACTTATAGTGACTCTATGTGAAGGTATGGCCTCACAAGTCTTGGTCTACCCACCACACATTTATCAAACCCAGACAAGTGCCTTTAGCAGTGTGAAGAAACTCAAAGTCGAGCCCAGCAGCTGTGTGTACCATGAGAGGGCACACCTGTGGACTTATCTGAACAGCAGAACCCTTGGCATTGTGCACCTAACGAAACAAGCCCACTCGTTTGTGAACCGAGACTTGGCAGTGGGCGTGAAAGTGCGTGGAGGACAAGAGTACCCTGTGCAGACAGTGGTGGTGCGTGGTGTACAGAGACAGCAGCCCTgtaaaagagaaggaggaggaggaggaggacaaggCCCGGCTGCGGCCCAGCAGCGACAGGACGCAGGGATTGTCCACTTGCAGGGcaaggagcagcagcagacagacacagcaaGTGGGGGCAGCAGTGGAGCAACAGGGGCAGGAGGAGGGGGAAGGGGAGAGGGCTGCAGTGGAGGAGCtgagggaggtggagaggaggagggtgaCAGAGAAGAGAACTGTGGAGGTTTGAACTCAGCTGACAGCTCTCAGCGATGTGGGCTGAAACGTAAAAGTGAGGAGCTGGATAACCGAGGGAGCGCCATGCAGATTGTGGAGGAATTGTCAATGTTACCTGCCATGATGCAAACGACAAATGTGGGGAGCGCAACCATGACTGCGCCTGCGGCTGTGGGGGCTGGAGGGGGCCCCTCCAAACAGGGTGTAGGTGCAGCAGGAGGGACTGGAGGAGGGGATGGGGACTATCAGGTAGTACAGCATGAAGTCCTGTGTTCCATGAAGAATACATATGAAGTGCTGGATTTCTTGGGACGTGGCACATTTGGCCAGGTCGTAAAGTGCTGGAAGAGGGGCACGGGCGAGGTTGTGGCTGTGAAGATCCTGAAGAACCACCCTTCATATGCACGGCAGGGTCAAATCGAAGTTGGCATCCTTGCCCGTCTGAGTGGGGAGAATGCAGACGAGCACAACCTGGTGCGAGCCTttgaatgcttccagcaccgcaGCCACACCTGCCTGGTGTTTGAGATGCTTGAGCAGAACCTGTACGATTTCCTGAAGCAGAATAAGTTCAGTCCGCTGCCCCTAAAAGTGATCAGACCTGTGCTACAGCAGGTAGCTACAGCCCTGAAAAAGCTGAAGAGCATGGGTCTGATTCATGCAGATCTAAAGCCGGAGAACATCATGCTGGTGGACCCAGTGAGGCAACCCTACAGGGTGAAGGTGATAGACTTTGGCTCAGCCAGTCATGTGTCCAAAGCGGTGTGCTCCACGTACCTCCAGTCACGGTACTATagGGCTCCAGAGATTATTTTGGGATTGTCGTTTTGTGAAGCCATAGACATGTGGTCCTTGGGCTGTGTCATAGCTGAACTTTTTCTGGGCTGGCCCCTTTACCCTGGGGCCCTGGAGTACGACCAGATTCGCTACATTTCTCAGACACAAGGTTTGCCAGGGGAACATTTATTGAATGCGGGTACAAAGACTGCACGGTTCTTTTGCAGAGAGTCCGACTCCCCTTATGCAGCATGGCGACTAAAGtCAACAGACGAGCATGAGACGGAGACGGGAATGAAATCAAAGGAAGCCAGGAAGTACATCTTCAGCTGTTTGGAAGACATAGCGCACGTGAACTTGGTGATGAATCTGGAAGGTAGTGACTTGTTGGCGGAGAAGGCAGACCGTCTGGAGTTTGTGGGCCTGCTGAAGAAGATGTTGTTGATTGATGCAGAAGAGAGGATTGCCCCTTCGGAAGCTCTCAGCCACCCCTTTGTAACAATGCATCACCTGCTCGACTTTCCCCATAGCAACCATGTGAAGTCATGTTTCCACATCATGGATGTTTGCTGGACTCGTCCCAGTGCATATGAGGTGGCTCACAGAAATAAAGGTCCTTTCATCAGACCTGTGACAACAAACGCTGCCGCCTCTGTCAACCACCCATTCAGCAAGATTACCGGTGTCCACACTCAAGGATTAGCCCCATCAGCCCCATCAGTGATGCACCCTGGGATACCACTACAAACAGGAAGTGGTCAGTTTGGatgcaatgattcatttcaGCAGGCACTCATTCTTTGTCCCCCAGCCATTCAAGCTAAACCAGCAGGCTACTCTGTTCGAATGGAGGCTTCTGTGCCTCTGGTCACTCAAGCACCCCCCATCCAGCCCATTCAAATCCGACCTGGAGTCATCACACAGGCCTGGTCCAGCCGTGCTCAGCAGATCTTGGTGCCCACTTGGCAGCAGGTGACATCAGTGCCCCCACCACCAACCACATTGGCATCTGATACTATGGCAGGCTCACAAAGATTGGGTGACTGGGGGAAAGTGCGTCCTCATGGTAACCATTACAGCTCCATGATTGCACACCCTCAGCCATTCTTAACCAACCAAATGACCATGTCCACCCACCAGCCAATCAACATAGGCATTGCACATGTGGTGTGGCCACAGCCGGCTGCCAACAAGAGAGCCAAGCCTTGTGTGAACAGGGGCAGCAACTTCTCCCAAAACACGAACGTCCAAAATATAGCATGCCAGTCCCCAAAGATGGCCGATACAGCAAAGAATGTGCAGCAGGTAGAAGCCAGATGCCCAGAGGAAGGGCATGCTGCTGAAGAGGAGCAAGGCACAGAGCAAGTGGAGGAGGATGACGAGAAATGCTGTAAAGTGGAGCCAGACAGTGAGGAGCTTTCAGCTTCACAGGAGCAGCGGCTGGCCATGGTGATCTCTGACCTAGCTAGCCCGACTGTTAGTGTCATCAGTATTAGCAGCGACGAAGAGGAGAGCGCCCAAAGGCACTCAATGGGGGAGTGTAAGGGTAGTGCAGATTGTGAGGCGTGTCAGAGCACCGTCAGTATGGAGAGAGTCTGTTCCCTCAGCAGTCCAGACAGCACACTCAGCACCAGCTCTTCTGCCTCAGCCCAGTCCAGCACCTCACCCTGCAAACACCCCAACAGTATGTCAGATGACGAACAGGAGAGTGGTTGTGACACCGTGGACAGCTCGCCTGCCTCAGACGCCTCTCGCCACAGTCCCTTCACACAGCGACGCTTCATCGCCGACAGCAACCAAAACTGCGAGCCCCGCGTTGCGTGCGTTGCCCCGGAAACCGAGCCCAGCAAGCCAACAGTTCGTACAGTTGTGGTGCCTCCAATGAGAGtgcagaacaacaacaacaactactacCCTGTTGTCAGTGAAACCTATGGCAACACAGGTCACATGGCCTGGGATTACGCTGTCTTTGTAGACCACAGAGGTTCTCACAGTCTTAGAGTCTTCATGCCAGTCCAAAGGGCGAGGCATTCCTGGGCGACAACATCACCACTCCACTCCCCTCCTCAACAGGCCGCAGAAGATCACCCCTGCATTCCAGCCCCAACAACAGCAGCCTATAGGCTTTGGGCAGGTGCAGCATTTCGGTTCCTGCCATCAGGAATGGAACGGCAACTTTGCCCACCGGAGACCACAGGCCTATATCCCCCCCACCATACATGGACACACATTCACCCTGTCCCACAGCAGCCCAAACCACACTACGGGCCCCCACCTTGGGGGCCACCCGCACACCCAGCCCACCTTACTTTCCTACCCCCCGCCTGGTCCTCTGGTCACAGCTGCACCCGTGGCCCACCTCCTGGCTTCCCCTGTAGCCTCCCGTCCCGTCCTTCAGCCCACCTACAGCATCTCCCACCCGGCAGGCATCGTGCATCAGGTCACAGTGGGCATCAACCCCCGGCTGCTGCCCTCCCCCACCTTGCACCCCCAGGGCCAATTCAAGCCCCTCTTTCCCCCGCACTCCTACATTGCCTCGCCCGCCTACGCCAGTTTCCCTCTCAGCCCCACCAAAATAAACCAGTACCCTTACATTTGAGCATGCCTGCCCAGGTACCCTTTATACCACCAGAGGGCTAAGTGAGCAGGGCATCTTAAACCACAAACATGGTTTTCATTTCCAAAACCATGGCACAACCACAGAGAAAGCAAGCTATTTTTTGAATCATGTAGACTTGGGTGTAATTGAACttcaagctttaaaaaaaaaaagaaagaaaaaaagtgagagtTCCAATGATGGAGATGATTTGGGCAaagaataaaaaggaaataatgTATGAATGATTgaatgaaagaatgaatgaatagtTAAACTCACACTTAATGTGTTTTGCACATTTGATATATATCTTTGCATTGGATCTTCTACGAATACTCCTCAAAACAGGTAAAATAATTGGGGTGGTGTTGAATAGTTAGACTTTGCACCCCTGATCCCAGCTATTTTTCTATATTGCCTTCTTACGTGTGCAAGACACATCCATATTTGTAAAGCCATCCCAGTCTCTAGCTCTAGATCGACCGATGCACACGTTGTCCACAGTGTATGTTGTACTGCGTTTGAAGTATTTGTACCTTTTCGGTGTCTTTTGGTGTTAGCAATGTCATGTCAATTAACCGATTTATATAGGGTCGTTCCTCACGCTGCATGTGGTCTTGCATGAGcaaaaatgtaaacagaaagATGCATAGACGTTGCTCTTATTGTTTGTGTCACAAGACTCGCTGCATTGTAAAACTGTCCCCAGCCATAGTGCCTTACATATTTGAGGTTGTTAATGTTACTACTTATATATGACTATATACATGAATATTAATGTACTGGACTGCAGCACTTGAAATTCCAATCAGTCGATGCATCCTATGTGTGAGTATATATATGCACACGTGTGTATATATCCTTGCATAGCCTGCATGGATGTGATGTATCGCGGATAGCGGTGCTTAACTTTTGGAGTCGGTGTATATTTCAGTGTGTAGTGAGTTACTTTTCTGTTCTTTCAAGAAGAACAGCATGCTTTGCTGTTGCGAATGCTTACCGTTTCATTAAAAACGTTCTTTTTTCCGTTCTCCCTTTCCCCCCGAATGAACTAGTGTACCAAGTGCAAGTACTGAGTATTGCTTAATATTTGATAATCACTTTCTATTTAGTAAAACTGTTATTATAAACAGTATTTGTACTGTTTGATGAAACTGCAATACAATCTAAATAGTCGtcgatttgttttcttttcttgtctttgtattttcattttgagTATTTTCACTTTGTTTCTTAGATGTTTAGAAGTGTGGTGGGCATGGCTTTGATTAGGTAAGGaaagaaatgcaaattaattcaTGGTATGGAATTTTCTAAGCCTGAGCAAACCATGTAGTAttcaatatacacacatatatggaCATATATTATAGAGCTAGACTATTTAGTACAGATGCTTGATAAGGTGTGAGTTAATTGTGTGCAATTCTCATTTATGCATGTGTGACAAAGTTTAACTTTTTCCCTTTACATTATACCATTTGTCAAAGGCTTAAGGCTTATCGGTGTCGACTGCTTATTTTATACATTCCGTCAGGGaggatatatacatatatatatatatatatatcatggtAGCACCAGTCTATATATATGTAGATAtgctgtgtgtgcatttttttttctgttcgtTTTACTAGttatgtgtgtctttttgtctttttattttcaaatgaagTTGCTTGTGCAGCACCAAAGACTGTAATTCATTTCCTGAGCAAGGTAGCTATTCTGTTTGCATAGACCTCAGTTATACTGTAGTTGTAGAATggggttaaataaaaaaataaaaacattgtatttaaaaaaaaaaaaaaaaaaaaaaaaaaacggccgAGGTTTTGTCTAGCTTATTGGGCAATTAATAAGTCGTATCATTTCTTTCTTGAATGTATCATAGATAAGCTGCTATATGATGATTGCCACTTCGATAGCTGTGAAAttaggtgatttctctgagttTAAACCCAGCGTTGCTATTTTTGTATAGGTCCCTAATTATCTGAAATAGAAGTGGTtttgatttttgtgttttgcgTTCATATTTGGAGTGTCATTGTAACTACTGTATTGCTGATGATGAACATTAGTTGCATTTGTTGTTTctcggggtgtgtgtgtgtttttgcatcaGTATTTTATCCTTATTAACCTTTCGGGCTCATCACTGCATATAAATGATGTATCGATATAACTTaattttttgtatgttttcatATTGACGTTTTGTACGCATCTAAAGCTGTAGCTTGCAGGATTGATTTAACTTTTTCATTGTACGTATATACGGTGTACTACCAGTACTCTTTTGTGTGTTACATGAGCACTGTGAGATGCCAGAAAAAAATATCCATTATGTTCATTGAAAAGCTTCTGTAATGTTTCCACcaattacacacaaacacactcgcCACTAAGCACTCGTACAGGGTTAGGCTTGTGAGGGTTTGGGGTGATTAGATTGTGTCCAAAAATAAATTTAGCCCAATGTTTCTGTTccaaaataatgttttacaaCTTGTTTTCTGGATGAATTGATTTGAACAACTATTTATCACAACCTGTTTTAACTGTTCAATGTTATACCTGGCTAGAATATCAGTTTGTTATTCTAAACTGCCTTGTGTTCAGATCGCTCTCCCCTTTATGAGTGTCTCATATCAAAATGATATTTTGTCAACGCAAAACTGTGGCCATTGTTATGTGTTCCTTACCGAAATTGACAGTGTGAGCAGCACTGTGTATGTGCCTTGAGCTTCAGAAAGTGAGAATTGAAAGTGAGAAAAGATGGTGATTCCTCACCTCTTATTTAAGGAGGAAGGCATATAATCCACTAAGAGTCTGTTACCGTATAGAGTAGACAGTCTTTTAACGGCCACATGaccattaaaaacaaacacGCATAATAGGACTTCAACAGTGTCATTCCAGGAGACTTGTACTCGTCTGATCAGCTCGTAGACACGACAGAGGACATGTACATGGTGGTGGTGCTCCTCTTGTTTCAGATAGCCGCCACCAGAGCCTCTCtgtgataacacacacacaataaaacacacatacaccttgAATGATACGGCACTCAACGGTCTTTGGATAGTCACTCTGGCTAAACAGCAGATGCAATACTTTACATTGTGCGGTCATTGCACCACCAAGTGTTCTTAGATAATCTCCATGCTTTACATTTCCTGGCATGTACACCTAAGTTTTTTCACTTTGTCTGCCTAGAAGCTGTCTGCTTAGAGCAGCTTTATCATCGTGAAAGTTAAGGCTGAGCGGGAGTAACCAGAGCACCGTTTACAAcactggcctttaaaaaaaaaatttttttaaaaatttaaaaaaatcagagaAGCCGTACTTTATATCCAGTCTTGATGTTGATCGGTGTTCTGGATGGAAACCGCTCTGGCAAGGAGATTATTGTGGTTTTTCTGCACAGTGAGTCATGAGTGCAATACTCCACATTTAAACACTGACATTGATATGGTTGTatgatcaatttttttttttcttacctgtACGCTTTACTGATCATATCGAGTATCATTTTGGGAAAGAAAGCGTATGGTGACAAGGCATGACTTTGGCAGATTAGTGCTCGAAATAGTTCCCAATAATAAGCATGTGAAATGTAATCTGTGTTTTGATTCCTCCAAAGGTATTCACCAGCAATGCGCCTGCATAAACTCTCCCATACTTGTTAGGAAAAGACGAGAGAAATCTTAAAACTTTTTAATTTCCCACACGATTGACACCCTAGTTTTAtggatctcttttttttttttttttttaaggtttcaTGTAACATTTAACAGATAAATGATTTGTAAAATTACTACTATTAAAGTTGCCACTTTGATATCAGAAAACAAATCCTCTGCTGCAGTATTATCCTTTAGAGATGTTTAATTCAGGGTCTATATTAGTCTAACTGTACTACTGTGTTACGctttgattttcatttggaGTTTTGTTTTACTTAAGCTCTTATTTTTCTGGTCATCTATCAATTTCAGAGTTAATTCACACTGCAAGTTATGGGATCATCCGTTTAGATTGCTCATCAAATAGACTTGATTATGAAATCTGAACTGTTACTGTTTTAATACCTGTAgatttttttgtggctttgtttttttgtttaattttgctTTTTCTATTTTGTGCTACACTAGTTTGCCATGTAGCAATTGCACTGTGCAATATTTACAGTATGAGGACTGGGAAAACTAACTCTATGGATGTGATGTCTCTTTACAGTTTGCGATAGTGTTTCCTCTCTAGTTCTCAGTGATTTAGGTGTGACCAAGCCTTCTCTACTTTGTCACATTAAGCGGGTTTTCCAGGTGACTCTTTTGGTGAGTGTCAAAATAAGACTTTATGGTGTATTATTGTTAAGATTcactttgaattaaaaaaaatctattgatGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40860 lncRNA downstream 77215 29140354 ~ 29140638 (-) True G30759
TU40784 lncRNA downstream 548889 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 667853 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 825335 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 992406 28225093 ~ 28225447 (-) True G30634
TU40938 lncRNA upstream 41367 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 44775 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 44775 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA upstream 44775 29313958 ~ 29314646 (-) False prrg4
TU41003 lncRNA upstream 117574 29386757 ~ 29396683 (-) False G30852
XM_039794164.1 mRNA downstream 1121 29155914 ~ 29216732 (-) False kiaa1549lb
XM_039794163.1 mRNA downstream 1510 29154972 ~ 29216343 (-) True kiaa1549lb
XM_039794118.1 mRNA downstream 81792 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA downstream 82091 29126788 ~ 29135762 (-) False LOC120555430
XM_039795790.1 mRNA downstream 153296 28985561 ~ 29064557 (-) True spon1a
XM_039795045.1 mRNA upstream 15123 29284306 ~ 29294681 (-) True depdc7a
XM_039795365.1 mRNA upstream 30172 29299355 ~ 29309999 (-) True qser1
XM_039795364.1 mRNA upstream 30172 29299355 ~ 29309579 (-) False qser1
XM_039796141.1 mRNA upstream 42009 29311192 ~ 29314709 (-) True prrg4
XM_039794524.1 mRNA upstream 48906 29318089 ~ 29326464 (-) True eif3m
XR_005638770.1 other downstream 370888 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 370888 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 370888 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 547985 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 1215383 28001640 ~ 28002470 (-) True G30577
XR_005638738.1 other upstream 133571 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1261568 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3622316 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4073064 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 4169280 33438463 ~ 33449061 (-) False znf710b

Expression Profile