RNA id: XM_039796141.1


Basic Information

Item Value
RNA id XM_039796141.1
length 1837
RNA type mRNA
GC content 0.42
exon number 7
gene id prrg4
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29310550 ~ 29314709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTATTTACGTATCATGTTATCCAGGTAAACGTGATCGATTGGTTGCGTCTGCTCAGGTAGTTTAGGCGGAGCAGAGGCTACCTCGGTTGGGAGTAAACAAAACCTTTTTAACCTACCGGGAACTGTCTGGAGTTGCTCAGCGACTAGCGCTGCTATAATTCATTGTACTTTACCTATACACGTCACGATGAGCCGAGTTACATTTTTTCAAAGGAAGTTGCTAAACTCGGCTGTTGTTTGTGACTATCGCTAAACGTTTCCTGGTTCATCTTATCAGCGTCGAGGCAAGtaacctacctacctacctacctgctCTTTTAGGTTTCATTTTGTTTCGGCGTTCAAGACACTTATCATCATAGGTAGCCTAAAGTAGAAGTAGTCTACCTGGTGCCAGTTGGGGAAAGAAAGGTACATACATAGGATATATAGTAGGCTAGTTTGAAGAAGCTGGGTGTGCTGTTGATGGTACTCTGCCCTCTGTAGCCAATTAGTGCCCCACCCGCTCTCCTCGCGCAGGTGCACGCCTGACCATGTTGTTTCATCTGTTCATACTCCTTCAACTCCTGGCATGTGGAGATCTGGCCTGTATGAGGAGGTTACTGTCGGAACATGAAGACCAAGAAGTGTTTTTAGATGATGGagaaaaaaaaagggaggtcTTCGAAAACATCCCGGCTACAGAGGCTTTTTGGAAGAAATATACTGAAGAAAAGGACAATAGCCTCTCACGGGTTGATGTGACCTCTCTTTTGGTGGGACTGATTGCTGGTGGAGTGGCCATTGTTATTGCTGGCCTCCTGGTCTGGTATTTATGTCACGGCAAATGCAAAAACAGGCATGCAAACTCCTCTCACAGGTCCATGCGGGGGCGACCGAATAGGAGTAATGCTTCTTTAATAATGAGACGGCTGGAGGAGGTGTCCTTACAACCTGTACCCCCACTCCCTATGGAGGAAATAGACCCCCCAGGGCTGCCTTCCTATGAGCAGGCAATTGCAAAAAGTGGACCACACGACGCCCCACCTCCTCCCTATCCTGGCTCTCAACCTGGAAGTATTCGGCGGTAGTATCTTCAGGACAACACGTCTGTCAGCATTAAGCAGACAATTTACAACTAACATTTACACTGTGCTGCTCTGCTTAGCATTGTGTACCAATTCTTTCCATCACAACATTTAAAACACTTCCTTATGCCTTCTGTTTATTGCTCTGATTATATTTATCCACtcatacatttaattttttttctggtcTTTTTTTCTTAGCAGTATAATCCCCCATCTTAATGTGCTTGTGCCAAAACAGTTTTGTGGTAGCCTCTACTAACTATTTTCCCAGGTCTGATTGTGCTTTGTAATATAATTGTAAATCTGTGAAGAATAAGCTTTATAATACATGTTACCCAGTTTGCTGCTTTTTGTCTAAATGGAAATGAAGAATCAATAATATGTTGGACATGAGATATTTAAGTTGCTGGAGTACTAAGGCCCCTAAGGAGCTGTTTCTTTAGATGCAGCATGCATAGAGGAGCTTATAGCAAGGGGCATTATAATTATATGTCATTACAAAATAAGTATTTATTGCAATTAAAAAGAGACACTGATTTGTGTAGTTATACAGATTCCTGTCTCCTTCAGAAGGAAAAGTAGTTCCAGCCAAACTGATTTCAGTAGCGTGATGGTATTCTATTGCCataaagaaaatgcttttaAGGATAATACAAGTATTTTTGATGTACTGGTCTACCAGCTTGCTTTGTAAACACTTTGTACTTTCAGCTGTATATTatcttttaccttttttaattgttattaaatgTGATGGTTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40902 lncRNA downstream 73766 29217855 ~ 29237426 (-) False LOC120555471
TU40860 lncRNA downstream 170554 29140354 ~ 29140638 (-) True G30759
TU40784 lncRNA downstream 642228 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 761192 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 918674 28342700 ~ 28392518 (-) True G30644
TU41003 lncRNA upstream 72048 29386757 ~ 29396683 (-) False G30852
TU41004 lncRNA upstream 72048 29386757 ~ 29390318 (-) False G30852
TU41002 lncRNA upstream 75254 29389963 ~ 29396683 (-) True G30852
TU41054 lncRNA upstream 300731 29615440 ~ 29616375 (-) True G30898
TU41058 lncRNA upstream 302657 29617366 ~ 29617855 (-) False LOC120556497
XM_039795365.1 mRNA downstream 1193 29299355 ~ 29309999 (-) True qser1
XM_039795364.1 mRNA downstream 1613 29299355 ~ 29309579 (-) False qser1
XM_039795045.1 mRNA downstream 16511 29284306 ~ 29294681 (-) True depdc7a
XM_039794169.1 mRNA downstream 42009 29217853 ~ 29269183 (-) False LOC120555471
XM_039794524.1 mRNA upstream 3380 29318089 ~ 29326464 (-) True eif3m
XM_039794529.1 mRNA upstream 37539 29352248 ~ 29375600 (-) False rcn1
XM_039794528.1 mRNA upstream 37541 29352250 ~ 29358945 (-) True rcn1
XM_039794467.1 mRNA upstream 87326 29402035 ~ 29461235 (-) True elp4
XM_039794373.1 mRNA upstream 208049 29522758 ~ 29538735 (-) True LOC120555582
TU40901 other downstream 42028 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 464227 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 464227 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 464227 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 641324 28669191 ~ 28669868 (-) True G30693
XR_005638738.1 other upstream 88045 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1216042 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3576790 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4027538 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 4123754 33438463 ~ 33449061 (-) False znf710b

Expression Profile