RNA id: TU41003


Basic Information

Item Value
RNA id TU41003
length 1732
lncRNA type inter_gene
GC content 0.49
exon number 9
gene id G30852
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29386757 ~ 29396683 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGACTGCAGAAGGAAAATGATGTGGAATGTAGAGATATTGATCCGTTTAAACCATGAAGTTTCTCAGATAGATGGAGGGGAAAAGGTAAGTTGCTGCAACAGATcatgaatcaaagatggctatGTAGTACCCCCTTATTTACAGGAAAGGTGGCAGATATGTCAAAGAGTGCACTGTTTATGATTAATTCCCAAGCATGTTGGTAAACAATGAACTGTCTGCCTACCTGTTGAGGTGGTACCAGAAGTGGTCATTGATTGGCTGTTCATATGTGCCTGCATATGAGGGGGCGTGTATGTGTCGTAGCTCCGCCCGTTCACAGGCGGACTGGTAGGCAGCATGCAGGAATAAGAGGAGGTCTGGCTGGGCTATAGATGGGGGGAGAGAATGTTACATTAGCTTAGCCAACCATAGTTGTAGTCTGTAATACTGTAAGGCAGTGTCTtgatttaatttataattttagTTCTCTGAGAAAGCTATCCTctaaatttttttgtttgggCAGGAAACAATTTAAATTACTCATGGTGTTATTGATTCCACCCTTAAATCATATACATAAAATATCAGATAAAAGGTATATCTTTGATATAATTGACTAGTGAGCATTAGTCTTTTACTTACTTGCATAGGTAGATTGTTCGCCATGGTAAAGCTGGGCATGGGGGGCAACGCACTGTAGGTGTTTGCGAGTGCAGAGTCAGGTCTACCCAGCATTGACCCTGAGGTGAAAGACACCGGTGTAGTGGGCTGTGGGATGGCCTGGTAGACGCTGGTGCTAAAGCTGCTGCTGATGGGAATGTGACTGGAGGAGTTGTTGGCCTGCCGGCGCTGGTTCCGCAGCTTCTCCTCTCGCCTCCACTTTGCTCTTCTATTTGAGAACCATACTTGTATTCTTGCTTCGGGCAGGTCGATTTTCGCTGCTAGTCTCTCTCGTGCGAAAACATCTGGATAATGAGTTCTTTCAAATTCTTTTTCCAGTGCTTCGATCTGCTCCTGTGTGAAGGACGTGCGGTTTCTCTGGAGTTTCCTCTTGAGCTGCAGTCGCATCTGTGTCTCCTCTGAATCCTCCCCGTTCGAGCTGATGgagtttgtgttttctcctgCGCCGTCTTGTTGTTGGCAgccatCTTGGTTGGGCTGCCCTGGCACTGATGTTCCGGGGTACCAGCCGGGCCGGGTCCCCCAAGTTCCTGTCTGACCGTTGAGCATTCTCAGCTTGTCATACATGCCATCTGCGCCCATCTGTTGCTTTTCACTAGCCAGGTTGCGGAGGACTCTGTTAATCGATGACACACTGGGTATATTGTCGTTGGTGCAGATCCCTTCCGACAGAAGTCTGTCACGGATCTCCCACGCGAAGATAGACGGACACTCCCGCTTGTACTGCGCGATTTTCGCGACCACCTCTGGAGTGGCAACCCTGGGCTTGCTGCCGCCTATTGCTCTCGGTCTTATGGAGCCAGTTTCATAATAGCGGCCCAGGATCTTGCTTACGCAGCCGTTGGATACCTTTTCACTGTCCAGCACTTGGACTTCATCATGGGTCTGCAGTATCCTGGAGATGTCGCAGGGTCGAGCACCACTGTGAGCAAGTTCAACTATTTTCTGCCTGGTGGAATCCGGCAGCGGTCTACCATTAACAAACACACCACCAAGCTGGTTTACGCCACTGTGACTGTTCTGCATCATTGAGGCTACGCCAGACTCCCACGTGGCTTGGTTgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40940 lncRNA downstream 72111 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA downstream 72111 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA downstream 72111 29313958 ~ 29314646 (-) False prrg4
TU40938 lncRNA downstream 72948 29310550 ~ 29313809 (-) False prrg4
TU40902 lncRNA downstream 149331 29217855 ~ 29237426 (-) False LOC120555471
TU41054 lncRNA upstream 218757 29615440 ~ 29616375 (-) True G30898
TU41058 lncRNA upstream 220683 29617366 ~ 29617855 (-) False LOC120556497
TU41061 lncRNA upstream 264985 29661668 ~ 29662088 (-) True G30905
TU41059 lncRNA upstream 273125 29669808 ~ 29670355 (-) False LOC120556497
TU41149 lncRNA upstream 765797 30162480 ~ 30288433 (-) False G30969
XM_039794529.1 mRNA downstream 11157 29352248 ~ 29375600 (-) False rcn1
XM_039794528.1 mRNA downstream 27812 29352250 ~ 29358945 (-) True rcn1
XM_039794524.1 mRNA downstream 60293 29318089 ~ 29326464 (-) True eif3m
XM_039796141.1 mRNA downstream 72048 29311192 ~ 29314709 (-) True prrg4
XM_039795365.1 mRNA downstream 76758 29299355 ~ 29309999 (-) True qser1
XM_039794467.1 mRNA upstream 5352 29402035 ~ 29461235 (-) True elp4
XM_039794373.1 mRNA upstream 126075 29522758 ~ 29538735 (-) True LOC120555582
XM_039794374.1 mRNA upstream 144924 29541607 ~ 29552473 (-) True rnaset2
XM_039796142.1 mRNA upstream 220637 29617320 ~ 29965747 (-) True LOC120556497
XM_039795576.1 mRNA upstream 770135 30166818 ~ 30178614 (-) True ddx21
TU40901 other downstream 117593 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 539792 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 539792 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 539792 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 716889 28669191 ~ 28669868 (-) True G30693
XR_005638738.1 other upstream 6071 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1134068 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3494816 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3945564 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 4041780 33438463 ~ 33449061 (-) False znf710b

Expression Profile