RNA id: XM_039794163.1


Basic Information

Item Value
RNA id XM_039794163.1
length 4944
RNA type mRNA
GC content 0.52
exon number 22
gene id kiaa1549lb
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29154972 ~ 29216732 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTCCCGGTTTGAGGAGTGGGCGGACAGGTCACCCCGAAGTGGTGGGAGCCGGCGGAGCGGACCCCGGTGGGCGCTCGCCGCGAAGGACGGATGCCGGAGGAGAGGGGAGGTGTTTGAGGGCCAGGTGGCGAGCCGGAGCAGTGGGGATGCTTGCAAACTGCCCGCTGCATGTGGGGATGCTTTTACTTCTTGTCCGGTGCGCTTTGGCCGCAGAGGAAAAATCCACCTATGATGCCTCTGGCTCCTCGTCTTTATCAAGCGACCCTGCAGTCACGGCTGCTCATGCTCATCCAATGGCGGAGGAGGTGCCTTTCTCAGTCGTCCATTCAGATGGTGACTCAGAGTCAGAGGGGGGAGCTTTATCAGGGCAGCCTGCTTTTTCTTCTGTCTTAACTGTCATGGCAGGAACTGTGAAACATCCAGTGAGCCTGGATGAAAGTAGAACCTCGCCAACCACCACCGGGGACGAGACCCACACCACCCAATGGCCTTCACATAGTTCCAGCCAGGGCTCAGAGATGTCTTCCTCATCGTCTTCTTTGGGAGATAAGATCCCCCTCGCCAGCTCAGAGGTGGGGACGGATGATTTAACCGCTGGAACATCCAGAGCAGTTGCGCTTGCTATCCCCAAAGAAAAAGCAGCCAGTCTAGCCCCCTCTCAATCAGACAGAATTACCCTTTCTGCTGTGCCCACCGAGAGGACATCTCAGGGAtcacctctgccccctcaacAGGACATCCCAACAGACTCTGTCCACCTTACCACCACAACTGTAGCGTCAACTACCATAAGTAAACACCCCACCACTAACATGTCTTCCCCAAGAGTCACCACCGGAACCACACAGTTTGCCACCACTACCACACCACAGCCTGCACCAGTGACCAGGAGAACGACGACCACCACAACCGCCAGGACCCAGACCAGGAGAACGTTCACACCACCTGTCCCCAGAACGAGCCCTCCCAGGGGGGGCACCACAATCTTAACTTCCCCTTTTACCACCACCACAGAGGCTCCAACACAGCAGTGCAACATCACAGAGAGATTGTGGGTGAAGACAGTTGTTTCCATCTATGTGAGAAGAAACAGGCTGGACAGCATTCAGAGGCAGAACCTGCGAAGGGGGCTAAGTCAGGGCCTCCGAAAAGCTCTGAATGATACCTTTGCCCAAGCACAGGTGGAGACAGTATTTGGTTCTCCCAACATGACAGTGGCTTATCACGTGACTGGAGGGGACATGGTTTACCCTCCCTCTGTAGTGCTGGAAGGCTTGGACTCCTATGGCCGTGATAAGCTGATTTCAGACCTGCGACAGTACCTCCCCATGGTAACAGCCCTGCCCCTCCCAGTTGCATTATGGAGATCCAGCCCAGCCACAGGCTTCCAGCTGAAAACAGTGCTGCAGTTTGTGGGAGCAGGCGATGATCCTCGGTCCTGTCGGTTCTCTCAAATGATGGAGCAGAGGCTTGAGAAGGTGTTTTCTGAAGCACAGGCCAAAGTGCTCAACACCAACAACAGACTCTCTGTTCAGATGCTGAGTGTCTCCCAGGCTGCAGGCTCTCCTGCTGTGTCATTGGTCTACACTGTGAGGAATGGGACTTTCTTCCTTAATGGCACCACTGCCTCAAACCTCCTTGGTCAGCTGTCAGCTGAGCTGGTGGGCTACTTCCTCTTCTATCCACCACTTATGATTGCTGAGCCACTGGAGTATCACAATCTCAACACCTCCATTGCTACCCGAGACTTCTGGGTTATTACTGTGATCCAGGACGTGGATAACGCCAGCCTGGAGGGACAGTACCAAAGCTTTGCCAGTCTAATGGAGCAGCGGCTGGCAGAGCTGTTTGTGTTGGCAGGGCAGCAGGGCACTCGTTTCAGACGAGCCACTGCTGTAGGCAGCTTCACCGTCCAGATGGTGAGTATCCGTAGGGTGTCAGGGTCGAAGAATCCGGCAGAGATGACCTACTACGTCCAGCACAATGGCGTTCCTTTATCGGGCACGTCAGCTGCCAAGGTCCTGAACACAGTGGATTCTCAGACCATGGCGCTCACCCTGGGCTACTTTGTCCAGCTGCAAGCAGAGCctgTGGTCAAGAACCCTCCTAATAACCTTTGGATATTAGCTGCAGTGTTGGCCCCCATCGCCGTAGTAACACTCATTATCATCATAATCACAGCTGTGCTGTGCAGGAAGaataaaaatgactttaaagctGATGCCATCGGCAACCTCAATCCCCGAGCTAAGATGGCATATCGGAGAGATGTGGGCTATTATCACCAGCCAGTCCAGGGTTTTGACTATGCCAAGCAGCACCTGGGCCAACAGGGAGGAGATGAGGAGACCCTGCCTGCAAGTCAGGATACCCTTGTGATGTCTCTACAAATTCGGGACACGCCACTTTCACTAGAAAAGGCCCTGCAGCAAGACGGAACTGCCAACAAGAAAAGCCTCACCTCTGACAAACACAAGAGCAAGTTGCCGAGTGAGGACGGTTCCGTCATCAGCAACGAATCAGAGAAGCTGAATTCCGGTAGGGGCTTGACAGTGCTGAaagtcacagcacagcagaaacTGACAAAGGAGGAGACGCGCAAGAGGGAAGATCCATATGACACCTCCTCTGGCTCCCTGCAGCTTATTTCCATAAAGCCCACGGCGGCTCAGCCCCACTACACACACCCTGCATCCTCTGACCGCAGCCAGGACTCTGCCATCGTCAATGGAGAGGTGAACTTGGCTCTGAAGCAGAAGTCAGACATAGAGCACTACAGGAACAAGCTGAGACTGAAGGCTAAGAGGAAGGGATTTTATGACTTCCCCTCCGCAGACGGAAGCGGTCGAGCTGTGGCGCAGAGACAGCGGCACGGCCATGAGAGGGCAGCCGGTGAGCATGGCAGACCACTGGAGCCTGATGATGAGCGAGGTTCCACTTATGTCAAGTCTCACAGGAGGCACTCGCAGGTAGGGCAGACGGCCTATCGCAGCAGACAGAGTCTGAGTAGTCCCAGTCCTGGAGGAACAGAGATGGACATGCTTGTTATGAGGGAGAGACCAAGGAGAGGCATCCGCAACAGCGGCTATGATACTGAGCCTGAGTTGATTGAGGAGACGAATGTTGACCGCCTCATGGGGCCGCGGGAATACATGTATGGCCGGGGCTTGAAAGGCCCCTCGGAGACATCCACTCTGAGCTCGCAGCCGTCCATTGATGAAGTGCGACAGCAGATGCACCTGTTGCTGGAGGAAGCGTTCAGTCTGGCTTCAGGGGGGCAGTCCACATCCGGAAGGCACTCCCGTCACCACCACCCACCTTCTGACCAGTACAGCCCCGCGCCGCCTCCCCTCCCCTACGCCGACGTGGTGACCAGCGCCCCTGGTACAATGAGCTGTGGACGGGGAGGCCTGCAGTGGGTACCATCCTATGGTGCAGAAATGTATCAATGCAGCCTGCCCAAACCGGCCTTTCGCTTCACCCAGCTTCCTGAGATGGCCATGGGCTCTCCTCCCCCTTTACCACCTCGCACTGGACCTCCACCTGGGACCTCCTTACGACGTTCCACTTCTGACTTGGGGCCTAAGGGAAGGAGCTCAGAGACATCTGTCACTGAAATGCAGAGTCAACATGACAACAACCCATATGGGCCAACAACTAGAGCAGCACTTCCATCTATCACTGCAGAGCAGCCTGTGTCCAACTACTCAGGAAACCCAATAACAGCCGTCTACGCCATCCCAGCCACCAGGCCCGGCTACTCAGAATACTTTGTCTCCACACCAACCACCTCCTACCACAGTCCCTCCTGGATGTCCTATCCACCTGAACCTGAGGATGTGCCGCCACAGTGGGCAGACTCTGTGCCCCTGCCTGGGTACGTAGAGGCTTTTCCTCATCCTCGCTACCCACAGGGGAGCCCCACCAGGCTGCCCCTGCAATATAACAAGGCACTGGAGCAGCCACCCACTGCCCGTAGCACAGCATCCCAGCAAAGCCTGCACCAGGTGGTGAAGGACATGGACAGTATGCCCCTGAGCAGCCTCTCCACCTCTGCACTCGTGCAGGCTATCCGGCAGGAGGTGGCCAAGCTGGCGAAGAAGCAAAATGATGTGTTTGAGTTCTAGTTTTAATTCTGTCCCCTTGTGTGCAGAAGATGGTTAACTGTGCATTCGTTTTCAACAGAGGCACACAAAGGCGGTGCTCCTTCagactgattttttttaattttttttgtttgtactgtTAAATGGACTTTACCCACTGATTACCCACTGATTGATTTCTTTTCACACACCATTGGTGTTTTGCAGTTCCTGACTTAAAGGAGCAGAAaagattatgttttatttttatgttgatgATGTCCCGAGTAACGACATGCATCTCTTCTTTGTAGATATGTCAATAGGATACGCTAAATatggaaaatataattttttttccaggattagacatttttttgtgaATCACAATCAATTGAGAAGACCGTACTGAGAGGGCCGAATACTTCCTGTCAGATGGTGTAAGTATAAACCACAGTGTATATGAGCATGTACAGTATTAGGACATCATGTATCTTATCTCCTTTTATAGACCATCATCTTCAAAAAGACGGGCTATCAATATCATTATTAATATCAGTTCATTCAAGCATCCATACCACATCAAACTACCAATTCCAAATATTCTTCAGTTTATTTACATATCACATACCAACACCATGACAGTAACAATAGACACCGACTGTCCTTGGTTGTCTAATGATTTTGAGAGATTTAAAGTAGTTCCTGTTAATTAACAAATTTACTAAATACAGTATCTGCCTTTTTAGTTTAACCCAATTGAATGTGAAATCTTAAGTTGCATCTATGAAGATGCGACACATAGATGGAAATGTTTGCCTGTATGTATTTGAAATAGAGGGAAGCCTTTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40860 lncRNA downstream 14334 29140354 ~ 29140638 (-) True G30759
TU40784 lncRNA downstream 486008 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 604972 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 762454 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 929525 28225093 ~ 28225447 (-) True G30634
TU40902 lncRNA upstream 1512 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 94207 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 97615 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 97615 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA upstream 97615 29313958 ~ 29314646 (-) False prrg4
XM_039794118.1 mRNA downstream 18911 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA downstream 19210 29126788 ~ 29135762 (-) False LOC120555430
XM_039795790.1 mRNA downstream 90415 28985561 ~ 29064557 (-) True spon1a
XM_039794057.1 mRNA downstream 191299 28941368 ~ 28963673 (-) True syt9a
XM_039794058.1 mRNA downstream 191299 28945802 ~ 28963673 (-) False syt9a
XM_039794168.1 mRNA upstream 1510 29217853 ~ 29269183 (-) False LOC120555471
XM_039794167.1 mRNA upstream 1510 29217853 ~ 29269183 (-) False LOC120555471
XM_039794166.1 mRNA upstream 1510 29217853 ~ 29269183 (-) False LOC120555471
XM_039794169.1 mRNA upstream 1510 29217853 ~ 29269183 (-) False LOC120555471
XM_039794165.1 mRNA upstream 1510 29217853 ~ 29269183 (-) True LOC120555471
XR_005638770.1 other downstream 308007 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 308007 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 308007 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 485104 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 1152502 28001640 ~ 28002470 (-) True G30577
TU40901 other upstream 41635 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 186411 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1314408 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3675156 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4125904 33342247 ~ 33348090 (-) True wdr76

Expression Profile