RNA id: XM_039794164.1


Basic Information

Item Value
RNA id XM_039794164.1
length 4462
RNA type mRNA
GC content 0.55
exon number 23
gene id kiaa1549lb
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29154972 ~ 29216732 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGACCAGGGGGGGTGTTTAGACTTTAAAGCAGTGACCCAGCAGCTTCTATATACTTACATTTGTGGCTAAACGTCCCCCGAGCACACCCAAATGTGTGTCATCCATCCGGAGCAGGTCAACCGCCAACCGCTAAATGTCAAACCTTCGGCatagcatagtgtgcgcgcctCCCTGCGCCACTCGGTGATGATGGGTGGACCGAGCGGAGCGGAGCGATAGGGCGCATTTCTTAATTTCCCTTCAACGCCGCGTCTCCCCCCCTCCCGCCCCCCTTCCAGCCCTGGACACCACGACGAGACCGCGGGACCGCTTTGTTTCCCGTTCACGCACGAGGATTGATCCAATGTATTATTTACGACCGAAACTTCAGCAACTTATCCACTGGATATGGCTCCCGGTTTGAGGAGTGGGCGGACAGGTCACCCCGAAGTGGTGGGAGCCGGCGGAGCGGACCCCGGTGGGCGCTCGCCGCGAAGGACGGATGCCGGAGGAGAGGGGAGGTGTTTGAGGGCCAGGTGGCGAGCCGGAGCAGTGGGGATGCTTGCAAACTGCCCGCTGCATGTGGGGATGCTTTTACTTCTTGTCCGGTGCGCTTTGGCCGCAGAGGAAAAATCCACCTATGATGCCTCTGGCTCCTCGTCTTTATCAAGCGACCCTGCAGTCACGGCTGCTCATGCTCATCCAATGGCGGAGGAGGTGCCTTTCTCAGTCGTCCATTCAGATGGTGACTCAGAGTCAGAGGGGGGAGCTTTATCAGGGCAGCCTGCTTTTTCTTCTGTCTTAACTGTCATGGCAGGAACTGTGAAACATCCAGTGAGCCTGGATGAAAGTAGAACCTCGCCAACCACCACCGGGGACGAGACCCACACCACCCAATGGCCTTCACATAGTTCCAGCCAGGGCTCAGAGATGTCTTCCTCATCGTCTTCTTTGGGAGATAAGATCCCCCTCGCCAGCTCAGAGGTGGGGACGGATGATTTAACCGCTGGAACATCCAGAGCAGTTGCGCTTGCTATCCCCAAAGAAAAAGCAGCCAGTCTAGCCCCCTCTCAATCAGACAGAATTACCCTTTCTGCTGTGCCCACCGAGAGGACATCTCAGGGAtcacctctgccccctcaacAGGACATCCCAACAGACTCTGTCCACCTTACCACCACAACTGTAGCGTCAACTACCATAAGTAAACACCCCACCACTAACATGTCTTCCCCAAGAGTCACCACCGGAACCACACAGTTTGCCACCACTACCACACCACAGCCTGCACCAGTGACCAGGAGAACGACGACCACCACAACCGCCAGGACCCAGACCAGGAGAACGTTCACACCACCTGTCCCCAGAACGAGCCCTCCCAGGGGGGGCACCACAATCTTAACTTCCCCTTTTACCACCACCACAGAGGCTCCAACACAGCAGTGCAACATCACAGAGAGATTGTGGGTGAAGACAGTTGTTTCCATCTATGTGAGAAGAAACAGGCTGGACAGCATTCAGAGGCAGAACCTGCGAAGGGGGCTAAGTCAGGGCCTCCGAAAAGCTCTGAATGATACCTTTGCCCAAGCACAGGTGGAGACAGTATTTGGTTCTCCCAACATGACAGTGGCTTATCACGTGACTGGAGGGGACATGGTTTACCCTCCCTCTGTAGTGCTGGAAGGCTTGGACTCCTATGGCCGTGATAAGCTGATTTCAGACCTGCGACAGTACCTCCCCATGGTAACAGCCCTGCCCCTCCCAGTTGCATTATGGAGATCCAGCCCAGCCACAGGCTTCCAGCTGAAAACAGTGCTGCAGTTTGTGGGAGCAGGCGATGATCCTCGGTCCTGTCGGTTCTCTCAAATGATGGAGCAGAGGCTTGAGAAGGTGTTTTCTGAAGCACAGGCCAAAGTGCTCAACACCAACAACAGACTCTCTGTTCAGATGCTGAGTGTCTCCCAGGCTGCAGGCTCTCCTGCTGTGTCATTGGTCTACACTGTGAGGAATGGGACTTTCTTCCTTAATGGCACCACTGCCTCAAACCTCCTTGGTCAGCTGTCAGCTGAGCTGGTGGGCTACTTCCTCTTCTATCCACCACTTATGATTGCTGAGCCACTGGAGTATCACAATCTCAACACCTCCATTGCTACCCGAGACTTCTGGGTTATTACTGTGATCCAGGACGTGGATAACGCCAGCCTGGAGGGACAGTACCAAAGCTTTGCCAGTCTAATGGAGCAGCGGCTGGCAGAGCTGTTTGTGTTGGCAGGGCAGCAGGGCACTCGTTTCAGACGAGCCACTGCTGTAGGCAGCTTCACCGTCCAGATGGTGAGTATCCGTAGGGTGTCAGGGTCGAAGAATCCGGCAGAGATGACCTACTACGTCCAGCACAATGGCGTTCCTTTATCGGGCACGTCAGCTGCCAAGGTCCTGAACACAGTGGATTCTCAGACCATGGCGCTCACCCTGGGCTACTTTGTCCAGCTGCAAGCAGAGCctgTGGTCAAGAACCCTCCTAATAACCTTTGGATATTAGCTGCAGTGTTGGCCCCCATCGCCGTAGTAACACTCATTATCATCATAATCACAGCTGTGCTGTGCAGGAAGaataaaaatgactttaaagctGATGCCATCGGCAACCTCAATCCCCGAGCTAAGATGGCATATCGGAGAGATGTGGGCTATTATCACCAGCCAGTCCAGGGTTTTGACTATGCCAAGCAGCACCTGGGCCAACAGGGAGGAGATGAGGAGACCCTGCCTGCAAGTCAGGATACCCTTGTGATGTCTCTACAAATTCGGGACACGCCACTTTCACTAGAAAAGGCCCTGCAGCAAGACGGAACTGCCAACAAGAAAAGCCTCACCTCTGACAAACACAAGAGCAAGTTGCCGAGTGAGGACGGTTCCGTCATCAGCAACGAATCAGAGAAGCTGAATTCCGGTAGGGGCTTGACAGTGCTGAaagtcacagcacagcagaaacTGACAAAGGAGGAGACGCGCAAGAGGGAAGATCCATATGACACCTCCTCTGGCTCCCTGCAGCTTATTTCCATAAAGCCCACGGCGGCTCAGCCCCACTACACACACCCTGCATCCTCTGACCGCAGCCAGGACTCTGCCATCGTCAATGGAGAGGTGAACTTGGCTCTGAAGCAGAAGTCAGACATAGAGCACTACAGGAACAAGCTGAGACTGAAGGCTAAGAGGAAGGGATTTTATGACTTCCCCTCCGCAGACGGAAGCGGTCGAGCTGTGGCGCAGAGACAGCGGCACGGCCATGAGAGGGCAGCCGGTGAGCATGGCAGACCACTGGAGCCTGATGATGAGCGAGGTTCCACTTATGTCAAGTCTCACAGGAGGCACTCGCAGGTAGGGCAGACGGCCTATCGCAGCAGACAGAGTCTGAGTAGTCCCAGTCCTGGAGGAACAGAGATGGACATGCTTGTTATGAGGGAGAGACCAAGGAGAGGCATCCGCAACAGCGGCTATGATACTGAGCCTGAGTTGATTGAGGAGACGAATGTTGACCGCCTCATGGGGCCGCGGGAATACATGTATGGCCGGGGCTTGAAAGGCCCCTCGGAGACATCCACTCTGAGCTCGCAGCCGTCCATTGATGAAGTGCGACAGCAGATGCACCTGTTGCTGGAGGAAGCGTTCAGTCTGGCTTCAGGGGGGCAGTCCACATCCGGAAGGCACTCCCGTCACCACCACCCACCTTCTGACCAGTACAGCCCCGCGCCGCCTCCCCTCCCCTACGCCGACGTGGTGACCAGCGCCCCTGGTACAATGAGCTGTGGACGGGGAGGCCTGCAGTGGGTACCATCCTATGGTGCAGAAATGTATCAATGCAGCCTGCCCAAACCGGCCTTTCGCTTCACCCAGCTTCCTGAGATGGCCATGGGCTCTCCTCCCCCTTTACCACCTCGCACTGGACCTCCACCTGGGACCTCCTTACGACGTTCCACTTCTGACTTGGGGCCTAAGGGAAGGAGCTCAGAGACATCTGTCACTGAAATGCAGAGTCAACATGACAACAACCCATATGGGCCAACAACTAGAGCAGCACTTCCATCTATCACTGCAGAGCAGCCTGTGTCCAACTACTCAGGAAACCCAATAACAGCCGTCTACGCCATCCCAGCCACCAGGCCCGGCTACTCAGAATACTTTGTCTCCACACCAACCACCTCCTACCACAGTCCCTCCTGGATGTCCTATCCACCTGAACCTGAGGATGTGCCGCCACAGTGGGCAGACTCTAACCAGTGTCAATTAGAAACCATTTGCTGATCTGAATTTATGGCTGGCGTTGGACACAACAAAATACCGGGGTGCCCCTGCCTGGGTACGTAGAGGCTTTTCCTCATCCTCGCTACCCACAGGGGAGCCCCACCAGGCTGCCCCTGCAATATAACAAGGCACTGGAGCAGCCACCCACTGCCCGTAGCACAGCATCCCAGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40860 lncRNA downstream 15276 29140354 ~ 29140638 (-) True G30759
TU40784 lncRNA downstream 486950 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 605914 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 763396 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 930467 28225093 ~ 28225447 (-) True G30634
TU40902 lncRNA upstream 1123 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 93818 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 97226 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 97226 29313958 ~ 29314646 (-) False prrg4
TU40942 lncRNA upstream 97226 29313958 ~ 29314646 (-) False prrg4
XM_039794118.1 mRNA downstream 19853 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA downstream 20152 29126788 ~ 29135762 (-) False LOC120555430
XM_039795790.1 mRNA downstream 91357 28985561 ~ 29064557 (-) True spon1a
XM_039794057.1 mRNA downstream 192241 28941368 ~ 28963673 (-) True syt9a
XM_039794058.1 mRNA downstream 192241 28945802 ~ 28963673 (-) False syt9a
XM_039794168.1 mRNA upstream 1121 29217853 ~ 29269183 (-) False LOC120555471
XM_039794167.1 mRNA upstream 1121 29217853 ~ 29269183 (-) False LOC120555471
XM_039794166.1 mRNA upstream 1121 29217853 ~ 29269183 (-) False LOC120555471
XM_039794169.1 mRNA upstream 1121 29217853 ~ 29269183 (-) False LOC120555471
XM_039794165.1 mRNA upstream 1121 29217853 ~ 29269183 (-) True LOC120555471
XR_005638770.1 other downstream 308949 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 308949 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 308949 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 486046 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 1153444 28001640 ~ 28002470 (-) True G30577
TU40901 other upstream 41246 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 186022 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1314019 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3674767 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4125515 33342247 ~ 33348090 (-) True wdr76

Expression Profile