RNA id: XM_039794374.1


Basic Information

Item Value
RNA id XM_039794374.1
length 1445
RNA type mRNA
GC content 0.42
exon number 9
gene id rnaset2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29541607 ~ 29552473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAATTGACAAATCTATTATCTTCTTTAAGGTCAGACATGAGGCTCTGCTTCCTTATTCTGCTCTGCCTGGCAGCAGCCCTGTCATCCGCCTTTGTGATTTCACCTCCacacatgtggaccaaactgatCCTGACCCACCACTGGCCCACCACCTTCTGTAGTATGGAACACCCAGCATGTCATCCCAACATTAGCTACTGGACACTACATGGACtctgGCCAGATAAAGGGATTGACTGCAATTCATCGTGGCATTTCAACTCTTCTCAAATAGAGGACCTGCTTCCAGACATGAAGACGAGTTGGCCTGACTTGCTTAACCCCTTGTCTGCTTCTTTCTGGAAGTATGAGTGGCACAAACATGGTACATGTGCAGCCAAAGCACCTTCTCTGAATAGTCAACATAAATACTTCAGTAAGGCACTGGAACTATACCataaagtggatttggacagCATCCTGAAGAAGTTTGACATCACCCCTTCAGAAAAATACTACAAGCTTTCACAAATTGAAGGAGTCATAGAGAACTTCTACAGCGTCAAACCTAAGATCCAATGTGTCCATCCATCAAAGAATGCTGATTTCCAGATTTTGGGGCAGATTGAGATCTGTTTCAACCCCGACTTCACCCTCCTGGACTGTGAGAAACAGTTTACAATGGAGACAACATCTAAGGGAGACTGGGACAATCCCGTTGCGGTTGACAAGGCATCTGGGTTCAGTGTGTGTGACCATGATATGCCAGTTTACTACCCACCTCTTCCATAAAACGCATACATGTGCAAACTGAAACGCAGAAGCGCACTACGACCttacttatacacacacaaagaaaacatacaaacaaattAACTGTACTGTGATTTAACATGTGCGCACATACTGACAAACTATAATTCTATTTTTCTCAGGCTTCACAATGAACATCATAACTGCAATGATAATGTATGTCAAAAATACCCTTACACAATCTGTGCagtctgaaaacattttttaactgCATTGAAATTCTGTCTGTGACAGGTACTTGAAAAAGATCTCCTGTGCAAGGTTATTTTTATATCCTACAAAAACCAGGACACACACTCAACCACTACTTAGTGCTTTAATGGAATTATGTCCCTTCCTGACCCTCACTATTAGATGAATCCGATATAGAGCACagcatgtttcttttttcttcagcTCAGGTCAGGTCAGGTCAGGCTGGCGGGCCGGCAGATGGACACTTTGTACATTGTTGGCAAATGAGTGGAGCCTTACGTCAGATTTGCAGGTGACTCTTACTTAATGTTATTGGTTGTGTAGATGTCAAAACATATATTGTGACAGCTGGCCATATTTTATACCACATTTACGTGCCACCTATTAAGTGCCATCTCTTTTTTTGCGGGGTGATCATATTTTTCCTTATTAAATAAATGCTTCTTCCACATTATAA

Function

GO:

id name namespace
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0033897 ribonuclease T2 activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01166 RNASET2; ribonuclease T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41003 lncRNA downstream 144924 29386757 ~ 29396683 (-) False G30852
TU41002 lncRNA downstream 144924 29389963 ~ 29396683 (-) True G30852
TU41004 lncRNA downstream 151289 29386757 ~ 29390318 (-) False G30852
TU40941 lncRNA downstream 226961 29313958 ~ 29314646 (-) False prrg4
TU41054 lncRNA upstream 62967 29615440 ~ 29616375 (-) True G30898
TU41058 lncRNA upstream 64893 29617366 ~ 29617855 (-) False LOC120556497
TU41061 lncRNA upstream 109195 29661668 ~ 29662088 (-) True G30905
TU41059 lncRNA upstream 117335 29669808 ~ 29670355 (-) False LOC120556497
TU41149 lncRNA upstream 610007 30162480 ~ 30288433 (-) False G30969
XM_039794373.1 mRNA downstream 2872 29522758 ~ 29538735 (-) True LOC120555582
XM_039794467.1 mRNA downstream 80372 29402035 ~ 29461235 (-) True elp4
XM_039794529.1 mRNA downstream 166007 29352248 ~ 29375600 (-) False rcn1
XM_039794528.1 mRNA downstream 182662 29352250 ~ 29358945 (-) True rcn1
XM_039794524.1 mRNA downstream 215143 29318089 ~ 29326464 (-) True eif3m
XM_039796142.1 mRNA upstream 64847 29617320 ~ 29965747 (-) True LOC120556497
XM_039795576.1 mRNA upstream 614345 30166818 ~ 30178614 (-) True ddx21
XM_039794962.1 mRNA upstream 800955 30353428 ~ 30361232 (-) True tacr2
XM_039795713.1 mRNA upstream 889774 30442247 ~ 30446660 (-) True LOC120556252
XM_039795707.1 mRNA upstream 904767 30457240 ~ 30487984 (-) False rufy2
XR_005638738.1 other downstream 80371 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 272443 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 694642 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 978278 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3339026 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3789774 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3885990 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 4254463 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile