RNA id: XM_039794832.1


Basic Information

Item Value
RNA id XM_039794832.1
length 1994
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120555776
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28478868 ~ 28507241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGATCTGCTACTGCGGATAGCTCAGAATAACACGGCTGCTCGCTAATTCCCGTCTATCGGGGCTTTCGCCGAAACACCGAGAGAGTATAGGGTCCAGAAAAAGCCAACAAGGCAGGCAAGAACACCGCGCCGCCGGAGTCCGCACCCCAGAATGGCTTCAGGAGACCTTTACGAGGTGGAGCGGATCGTGGACAAGAGGCGGAACAAGAAGGGTAAGTGGGAGTACCTGATAAGGTGGAAAGGTTATGGAAGTAAGGAGGACACATGGGAGCCAGAGCATCACCTACTGCACTGCGAGGAATTCATTGACCAGTTCAACAGCTTGAGACTGCACTCACACAAACGGCCCAAAGTTCCAAAAAATCGTCCAGAGCCCCTCATCACCAGCCAGCCATCTGCTACAGAAAACTCCAGAGCTCGGTCTGAGGCCCGAAAGAAGAAAAGGACTTTTGGCCCAGCTGTTGGGGTTAGAGTAGGAGCTGTTCTAGGGATTGGAAGTGGAGGGTCAGGACCCACTCAGAAGCAGAGGAAGGTGGGTCTTGGCCCTGGGAAACCTGCTTTAGGGGAAAGAATAAGCAAAGCCATGACATACAAGGCTCCTCCCCCCGGAGGGCCACACTTTGTTCACCCAGTGAGGATTCCTCATAATGGACTCCAGAATGGAGACATAGATCCTCTCATGTACAGGACAGCAGCAAGGTCACATAGACTGCCCTCGGACAGAGTGGATGGGGAACTAGGAGACATGGATAGCACTAGACAGCAGTTCGCCGCTGAGTCAGGCTCCCCTCTGGCCAATGGCAAGATGCATCTACACAGCTCAGTAAAGCGGAAGTTGGCTGAGGAGAAAGGCTACGTGTTCGACAAGCGGCTCAGGTACAATGTGCGACAGAACGAAAGCAACTGTCGATTCCGAGACATCGTGGTCAGGAAGGAGGAAGGCTTCACGCATGTGCTGCTCTCCAgccaaacaacagacaacaacGCTCTGACACCAGAGATCATGAAGGAAGTGTGTCGAGCTCTGGGTAATGCAGCTGCTGATGACAGTAAATTATTATTGCTCAGCTCCGTGGGGACTGTTTTCTGCAGTGGCCTGGAGCCGTCGTATCTGATAGGCCGTCTGTCCACTGACCGCAGAAAAGAGAGCAGCCGCATCACAGATGCCGTACGGGAGTTTGTGTTGGCATTCATCCACTTCAAGAAACCCATTGTGGCAGCAGTAAACGGACCTGCTCTGGGCTTAGGGGCTTCCATCCTGCCCCTGTGTGATGTGGTGTGGGCCAGTGAGAGGGCCTGGTTCCAAACTCCATGTGCAGCCCTCCACCTCACCCCTTCTGGATGCTCCTCCTACACCTTCCCCCAGATCCTTGGAGTAGCACTGGCCAATGAGATGCTGTTCTGTGGAAGAAAACTTACAGCACAAGAAGCATGCAGTCGAGGTCTGGTGTCGCAGGTCTTCTGGCCAACCACATTTAACCAAGAAGTGATGCTGCGTGTGAAGGAAATGGCATCATGCAATGCAGTGGTTTTAGAAGAATCCAAATGCCTGGTGAGGAGTATCCTCATGCCAGTCCTGGAGGAAGTGAATGACAAAGAGTGCCGGATGCTGAAGCAGCTGTGGTGTTCAACCAAAGGACTAGAGGCACTCTTCAGTTACCTGCACAACAAGGCGTATGAGAAGTGATCATCCACACCCAGAAAACCGATGGCTGTGGGTCAAAGGTTATCTACAGAGGGACATCCAGGATGATAACGGTGTGATCTCAAATTGAAGGAAAGGTTGCATTAAGGGTCTTGTTTCCATCCATCAGCAGAGGGGATTCTCTGGAGTTTCTGTTCGCTTCCATGTCTACCAACATTAAGTGATCATCTTTTTCTTCTGTGAATCAACATATATTTATTGGACCCATAACTGTCCAGATGTTTTATTCTTCGAATGAGTCAAACTGGAAAGGGCCAAATGTGCATTGCTTAAATACACACTGAAG

Function

GO: NA

KEGG:

id description
K00653 CDY; chromodomain protein Y

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40721 lncRNA downstream 86350 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 253421 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 419700 28046759 ~ 28059168 (-) True dbndd1
TU40650 lncRNA downstream 440661 28037134 ~ 28038207 (-) True G30586
TU40635 lncRNA downstream 459793 28012058 ~ 28019075 (-) False G30579
TU40784 lncRNA upstream 161357 28668598 ~ 28668964 (-) True G30691
TU40860 lncRNA upstream 633113 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 710614 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 803309 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 806717 29313958 ~ 29314646 (-) False prrg4
XM_039794114.1 mRNA downstream 9225 28466025 ~ 28469643 (-) True cenpn
XM_039794880.1 mRNA downstream 14090 28457400 ~ 28464778 (-) True atmin
XM_039794885.1 mRNA downstream 25668 28451122 ~ 28453200 (-) False LOC120555801
XM_039794039.1 mRNA downstream 58612 28239530 ~ 28420256 (-) False gse1
XM_039794038.1 mRNA downstream 58613 28239530 ~ 28420255 (-) True gse1
XM_039795058.1 mRNA upstream 262760 28770001 ~ 28846965 (-) False mafa
XM_039795059.1 mRNA upstream 268734 28775975 ~ 28846965 (-) False mafa
XM_039795060.1 mRNA upstream 321393 28828634 ~ 28846965 (-) False mafa
XM_039795884.1 mRNA upstream 409420 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA upstream 409420 28916661 ~ 28935996 (-) True ppfibp2a
TU40633 other downstream 476398 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 598655 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 707058 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 845246 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 1162710 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 161950 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 262760 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 262760 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 268734 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 750737 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile