RNA id: XM_039795060.1


Basic Information

Item Value
RNA id XM_039795060.1
length 2028
RNA type mRNA
GC content 0.51
exon number 3
gene id mafa
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28770001 ~ 28846965 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTACAATGCTCTTAAACTCATCTGCTGTGTGATCCCTCTAAAAAATCGCCCCTCCAGTCAGCACCTTGTAACGTGCGAGGCTGCATTCACTCCCCTACTTTCGGCGTTTCTCCCTCTCCGCTTGCGCAATGTATTAATGAAGAACCCGTAAAGTGTTAAATGTTTGAAATACAAAACCGCCGAATTCCACATGCTGAAAAAGGACTCCGCTACTCGTGCGCGCGGCACTGGTGTGTCTGTGCAATAGACTCTGCAAAGAAAAACTACTCTCACACGCCTGCAAGTCCGCGGCTGCAAAAAGGACGCTGAAAACCTCATTTTTCAGTTTCAAGACAAACGCTTAAAAATCAAACTGGCTCACGTTCTTTCCAGCCAACCCAGTTTGACAGCTGCTCTTCACCCCACTTGGAGGACTGTCAGCAGCAAGAGGATGGCATCAGAGCTGGCAATGAGCAACTCCGACCTGCCCACCAGTCCCCTGGCCATGGAATATGTTAATGACTTCGATCTGATGAAGTTTGAAGTGAAAAAGGAGCCGGTGGAGCCCGATCGCAACATCAGCCAGTGCAGTCGCCTTATCGCCGGGGGATCCTTGTCTTCCACCCCGATGAGCACGCCGTGCAGCTCGGTGCCCCCTTCCCCAAGCTTCTCGGCGCCCAGTCCGGGCTCGGGGAGCGAGCAGAAGACACACATAGAGGATTTCTACTGGATGTCCGGTTATCAACAGCAGTTGAATCCAGAGGCGCTGGGCTTCAGCCCCGAAGACGCAGTCGAGGCGCTGATCAACAGCAGTCACCAGCTCCAGTCATTCGATGGCTATGCAAGGGGCCAGCAGTTTGCTGGCGCAGCCGGAGCAGGAGGCACCATGGCCGGGGAAGAGATGGGGTCCGCAGCGGCGGTGGTGTCGGCCGTTATCGCTGCGGCAGCCGCTCAGAACGGAGGgcagcaccaccaccaccaccatcaccaccacagcAACAGCCACCACCAAGCACCTGGCGTCCAGTCCAACGGCACTTCTGGGACAATTCACCCACACATGCGCTTGGATGACCGTTTTTCAGACGACCAGCTGGTCAGCATGTCAGTGCGGGAGCTCAACCGGCAGCTACGGGGGGTCAGCAAGGAAGAAGTGATCAGATTGAAACAGAAGAGGAGGACCCTAAAGAACAGAGGCTACGCGCAGTCCTGCCGGTTCAAGCGGGTCCAGCAGCGGCACGTCCTGGAGGGAGAGAAGACGCAACTCGTCCAGCAGGTCGATCACCTAAAGCAGGAGATCTCCAGGCTGGTCCGGGAGAGGGACGCGTACAAAGAAAAGTATGAGAAGCTCATCAGCAACGGCTTCAGAGAAAATGGATCCAGCAGTGACAACAACCCTTCATCCCCGGAGTTTTTCATGTCATCCAGAAAATTCCTCCATCTGTGATTTCAAGCCCCAATCGTCCGTGCCCTTGGCTCTCTGAGAAAGGCCTGAGCTGTCTTATCAGTTTCCAGATaagtctcctcctccttctcttcttcttcctcaacCAGAATGTATGAGGGCTCTTCATGACTGAAAACTGACATATGACATATGACACTGATATCTGCTACCATATTGCTCCCTCCTCTCCACTAAATCCCATCCATTTGCTACTGCACAAACACTTACAGTTGCATGTGCttacacgcatacacacaaataaacatgcACAAGTTAGCCGACAGGCAATACCAAGATTCTGAAGGGGCAGTAGCCCCATCCAAAAGTGAGCACCGGCTCAACTTGTCATCTTTCTTGTATGTTTTCCTAATGTATTTTGGGAAATGTACATGCTatttgtgcatgtctgtgtgtgcatgtggtttTTACCATATAGCACAACATGCTTTTTCAAAAATTATGTATGTGTTGGTTTTTTAGGCGtcttctatctttatttttcacCTCAGCCGAGAAATAAACGTTAAGCGTTTGGCTTCCTAATTGAAACCAGAGATGGAaagtttgattaaaaaaaaacacaaagagaaagagagggaga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40784 lncRNA downstream 159670 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 278634 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 436116 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 603187 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 769466 28046759 ~ 28059168 (-) True dbndd1
TU40860 lncRNA upstream 293389 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 370890 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 463585 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 466993 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 466993 29313958 ~ 29314646 (-) False prrg4
XM_039794832.1 mRNA downstream 321393 28478868 ~ 28507241 (-) True LOC120555776
XM_039794114.1 mRNA downstream 358991 28466025 ~ 28469643 (-) True cenpn
XM_039794880.1 mRNA downstream 363856 28457400 ~ 28464778 (-) True atmin
XM_039794885.1 mRNA downstream 375434 28451122 ~ 28453200 (-) False LOC120555801
XM_039794038.1 mRNA downstream 408379 28239530 ~ 28420255 (-) True gse1
XM_039795884.1 mRNA upstream 69696 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA upstream 69696 28916661 ~ 28935996 (-) True ppfibp2a
XM_039795889.1 mRNA upstream 69696 28916661 ~ 28935989 (-) False ppfibp2a
XM_039795887.1 mRNA upstream 69696 28916661 ~ 28930337 (-) False ppfibp2a
XM_039795888.1 mRNA upstream 69696 28916661 ~ 28930337 (-) False ppfibp2a
TU40786 other downstream 158766 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 826164 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 948421 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 1056824 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 1195012 27626893 ~ 27633622 (-) True G30422
TU40901 other upstream 411013 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 555789 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1683786 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 4044534 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4495282 33342247 ~ 33348090 (-) True wdr76

Expression Profile