RNA id: XM_039795562.1


Basic Information

Item Value
RNA id XM_039795562.1
length 3697
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC120556151
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 33362812 ~ 33390311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTTGAAGAATTGGTTGTGTAAGTGCCTGTGCTCGGTGCGGACGTAAGtTACAGGAACCTGGCTACAGAGCATGAGACCCTCATGCAGAAGTATCTTCATCTACTCCAAATAGTGGAGACGGAGAAAACGGTTGCCAAGCAACTTCGACAACAGATAGAGGATGGGGAAATCGAGATAGAGCGGCTAAAATCAGAGATCGCTGGACTGCTCAAGGACAATGAAAAGATCCAGTCAAATCCAGAGGTACCTCCCAGTGAAGATGACACCGAGATTAAGAAGATCAAAAAGGTCCAGAGTTTCCTAAGAGGTTGGATTTGCCGCAGGAAGTGGAAAACCATTATCCAGGACTACATCCGTTCACCCCACGCTGAAAGCATGAGGAAGAGGAACCAGGTGGTGTTTAGCATGCTGGAGGCCGAGGCTGAATACGTCCAGCAACTCCACATCTTGGTCAACAACTTCCTGCGACCGCTCCGCATGGCCGCCAGCTCCAAGAAGCCGCCCATTACTCACGATGATGTCAGCAGCATCTTCCTTAACAGTGAGACCATCATGTTCCTCCATCAGATCTTCTACCAGGGCCTGAAGGCCCGGATAGCCAGCTGGCCGACACTGGTGCTGGCGGACCTGTTTGACATCTTGCTGCCCATGCTGAACATCTACCAGGAGTTTGTGAGGAACCACCAGTACAGCCTGCAGATCCTGGCCCACTGCAAACAGAACCGAGACTTCGACAAGCTGCTGAAGCAGTATGAGGCCAAGCCCGACTGTGAGGAGAGGACACTGGAGACCTTTCTCACTTACCCCATGTTTCAGaTCCCTCGTTACATCCTGACGCTGCATGAGTTGCTGGCTCACACCCCCCATGAGCATGTAGAGAGAAACAGTTTAGACTACGCTAAGTCAAAACTGGAGGAACTTTCCAGAATCATGCACGATGAGGTGAGTGAGACGGAGAACATCAGGAAGAACCTAGCTATTGAGCGGATGATTGTGGAGGGTTGTGAAGTTCTGCTGGACACCAGTCAGACATTTGTTAGGCAAGGTTCCCTGATCCAGATCCCGATGAGCGAGAAAGGAAAGATCACGAGAGGCCGACTGGGCTCTCTGTCTCtgaagaaggaaggagagagacagtGTTTCCTCTTCTCCAAACATCTCATCATTTGTACCCGAGGCTCCGGTGGAAAACTTCACATCACTAAGAATGGAGTGGTCTCTCTCATTGACTGCACACTGATGGAGGAGCCAGAAGGGACAGATGATGAGTCCAAAGGGGAGAGGAGTGGGCAGGACACAGAGCATCTggattttaaagtgatggtagAGCCGAAAGACGTCCAGCCCTACACCATCATCCTGGTGGCTTCATCCCGACAGGAGAAGACAGCGTGGACAAGTGACATCAGCCAGTGCATAGACAACATCCGCTGCAATGGTCTGATGATGAACGCTTTTGAGGAAAACAGTAAAGTCTCCGTGCCACAGATGATTAAATCGGACACCAGCTTGTACTGCGATGATGTCGATATCCGCTTCAGCAAGATGATGAACTCCTGCAAGGTGCTGCAGATCCGCTATGCCAGCGTGGAGCGTTTGTTGGAGAGGCTGACCGACTTGCGCTTCCTCTCCATCGACTTCCTGAACACCTTCCTCCACTCCTACCGCGTCTTCACTAGCGCTGACGTAGTGCTGGACAAGCTCATTACCATCTACAAGAAGCCCATCAGTGCCATCCCTGCACGTTCTTTGGAGCTTTTCTTTGCCAGCAGCCAGAGCAACAAACTCCTCTACGGCGAGCCACCCACGTCGCCGCGTGTCAGCCGCAAGTTctcttcccctcctcctctctccatcaccAAGACATCCTCGCCCAACCGCCGTCGCAAGCTTTCGCTCAACATCCCCATCATCACAGGGGGCAAAGCCCTGGACCTGGCTGCACTCAGCTGTTCTCCCAATGGCTATGCAAGCATGCACTCCACCATGTCACCCTTCAGTAAGACCACCCTCGACATCAACAAGCTCTATGTGTCTAGCACCGTGGCCAGCAAAATCCCCGATGAGGGAGAGACCAAAGCGGAAGGCAAAGCTGAGGAGTCTGTCCTCAACAAGCAAGATCTGTGTGTCAGAGAGGAATGCGATGGGGAGCCAAGTCAGAGTGACGAAGCAGAAGCAGAAATGTCTCCTCCCAAATCACCATCAACACCCAAGAACGTCAAGTCCAAAAACTCTGAGTTTTCCCTGTTTTCCTTCAACAACGGCATGGTGGTGTCATCTTGCCGGGAGCTGGACAATAACCGCAGTGCCCTTTCTGCCGCCTCGGCCTTCGCCATTGCCACTGCTGGTGCCAATGAAGGCACGCCAACCAAGGAAAAGTACCGTCGTATGTCGCTCGCCAGCACAGGTTTTCCTACAGACCAGAGGAATGGGGACAAAGAGTTTGTTATCAGGAGAGCTGCCACAAACAGAGTTCTGAATGTGCTGCGTCACTGGGTCTCCAAACACTCGCAGGACTTTGAGTTGAACACAGAGCTGAAGATGCGGGTAATTGGCTTCCTGGAGGAGGTGATGCATGACCCAGAGCTCCTGACACAGGAAAGAAAGGCAGCTGCCAACATCATCAGGACTCTCACTCAGGAGGACCCTGGGGACAACCAGGTCACGCTGGAAGAGATTACGCAGATGGCCATGGAGGACTCTAAGACTGAGCCGTTTGAGAGCCACTCTGCCCTGGAGATAGCTGAGCAACTAACACTGCTCGACCACCTGGTCTTCAAAGTCATCCCATACGAggAGTTCTTTGGTCAAGGCTGGATGAAGAATGACAAGAATGAGAGAACTCCCTACATTATGAAAACAACCAAGCATTTCAACGATATCAGCAACAGAATCGCCACAGAGATCCTGCAGTGGGACGATGTCAACCTGCGAGTGGGGGTGATTGAGAAATGGGTGGCAGTGGCTGACATCTGTCGCTGCCTCCACAACTACAACGCCATGCTGGAAATCACATCCTCTCTCAACCGCAGCTCCGTCTTCCGCCTCAAGAAGACCTGGCTTAAAGTCTCCAAGCAGACAAAGACTGTGATCGACAAGTTACAGAAGCTGGTGTCATCAGAGGGGCGATTCAAAAACCTGAGAGAAGCTCTGAAGAACTGTGACCCTCCCTGTGTTCCCTACCTGGGAATGTACCTGACTGACCTGGCCTTCATCGAGGAGGGAACACCCAACTACACCGAGGATAACCTGGTCAACTTCTCCAAGATGAGAATGATATCTCACATTATAAGAGAAATACGGCAATTTCAGCAAACGGCTTACAAGATTGATTATCAACCAAAGGTTGCAAAGTACTTGCTGGACAGCAGTTCAGCCCTGGATGAGGAGAGCCTTTACGACGCATCTCTAAGAATCGAGCCCAAAACTTCATCATGAagaggatctctctctctctctctctctctctctctctctctctctctctctctctctctctctatcaaaCCTCATATTGATCAAGTTTCAAGTTATTTATTGCATTATTTCCAGAGAAGCAGTTGTTGGCAATGAAAATCTTGGATCTCAGGCTCCGTCCAACAATgctcattaaatatatataaaaagagggGTGACCTctagcggcccgggttcgaatccgacctaaggccctttgctgcgtgtcatcccccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42127 lncRNA downstream 27410 33333954 ~ 33335405 (-) True G31707
TU42126 lncRNA downstream 28877 33333098 ~ 33333938 (-) True G31706
TU42125 lncRNA downstream 29796 33329613 ~ 33333019 (-) True G31705
TU42124 lncRNA downstream 97140 33265318 ~ 33265675 (-) True G31704
TU42052 lncRNA downstream 265837 33095621 ~ 33096978 (-) False LOC120556104
TU42221 lncRNA upstream 184470 33566426 ~ 33569379 (-) False serf2
TU42292 lncRNA upstream 332344 33714300 ~ 33715276 (-) True G31820
TU42296 lncRNA upstream 334763 33716719 ~ 33718580 (-) True G31822
TU42348 lncRNA upstream 473942 33855898 ~ 33856166 (-) True G31862
TU42371 lncRNA upstream 797949 34179905 ~ 34180494 (-) True G31881
XM_039795564.1 mRNA downstream 2509 33353861 ~ 33360306 (-) True LOC120556152
XM_039795560.1 mRNA downstream 9367 33346442 ~ 33353448 (-) False wdr76
XM_039795559.1 mRNA downstream 99882 33254629 ~ 33262933 (-) False cry5
XM_039795558.1 mRNA downstream 100234 33254629 ~ 33262581 (-) True cry5
XM_039795953.1 mRNA downstream 112209 33237294 ~ 33250606 (-) True alpk3b
XM_039795565.1 mRNA upstream 30709 33412665 ~ 33418903 (-) True si:ch211-107o10.3
XM_039795198.1 mRNA upstream 54855 33436811 ~ 33471335 (-) False znf710b
XM_039795199.1 mRNA upstream 54855 33436811 ~ 33471335 (-) False znf710b
XM_039795196.1 mRNA upstream 54855 33436811 ~ 33449052 (-) False znf710b
XM_039795197.1 mRNA upstream 54855 33436811 ~ 33449047 (-) True znf710b
TU42136 other downstream 14725 33342247 ~ 33348090 (-) True wdr76
TU41994 other downstream 468410 32891499 ~ 32894405 (-) True G31602
TU41279 other downstream 2830699 30530751 ~ 30532116 (-) False fam120b
XR_005638738.1 other downstream 3901579 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 4093651 29257978 ~ 29269164 (-) False LOC120555471
XR_005638776.1 other upstream 56507 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 424980 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other upstream 424980 33806936 ~ 33816370 (-) False LOC120555494
TU42453 other upstream 1108704 34490660 ~ 34599541 (-) True G31955
TU43972 other upstream 7266720 40648676 ~ 40662621 (-) True G33122

Expression Profile