RNA id: XM_039795576.1


Basic Information

Item Value
RNA id XM_039795576.1
length 2818
RNA type mRNA
GC content 0.49
exon number 16
gene id ddx21
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 30166818 ~ 30178614 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGCAGCTTTGCGCGTTCCTTTCCATCCGCGTGCCCGTGTGTTAGCCTGTGTGTCTACACTGAGGGATTCCATCAAGAAGAGAAATGCCGTCAAAAATCATATTTGATACCGAAGATCAAGCCATGGAGGACGATGTGGACACTGTCGCGGAGGCTAAACCCCTAAAGaacaagaccAAGGAGGGCAAGAAACTGAAGAAGAAGCAGTTGCAGGACCAGGCAGAGCAAGAGGACCCGGACTGTGAACCTCCAGCaccgaagaagaaaaagaaaaaagacaagcTGGCAGTGGACCAAGTGAACGGCAACATAGATGAGGCCACAGAAGTGAACGGCAACAGTAATGGTCTCAAAACACCAAAGAAGATTAAGAAAAAAGCCGAAGGAGACACAGAGaaaaagaagaagaagcaaaagAAAGCAATCGAAGAGGCAGAAACCAACGGACATTCCACCCCAAACACCCCTGTCCAGACGCCCATCCAGACACCGGCACAATCAAGTGAAGACTCTGCTAGTGACAGCGAAAAAGAACCGgAGGAGACACCAGAGCAAAAGGAAGGGGCCTTCTCCAACTTCAGGATCTCCCAATTCACCATCGATAAACTAAAAGctCGTGGAGTCTCTTACCTGTTTGACATTCAGGTGAAGACATTTAATTCTGTATACGATGGAGAGGACGTAATTGCCCAAGCCCGAACAGGAACGGGAAAGACTTTTTCATTTGCCATCCCTTTGGTGGAGAAGCTCCAGAGGGAGACAGTGCAGTTTGCCAGAGGCCGCGCTCCCAAGataCTGGTGTTAACGCCAACCAGAGAGTTAGCTATCCAGGTTGCAAAGGACTTTAAAGACATCACCAAGAAACTGGCTCTCACCTGTTTCTATGGAGGCAGCTCATACAATCCACAGCTCGAAGCTATCCGTAACGGTATCGATATTTTGGTCGGCACCCCTGGTCGCATCAAAGACCACCTCCAGAACAATAAACTGGACCTCTCTAAACTGAAACATGTTGTTCTGGATGAGGTAGACCAAATGTTGGACATGGGATTTGCAGAACAGGTTGAAGAGATTTTGTCTTCATCATATCAGAAAGACTCTGACTCCAACCCACAGACTCTTCTGTTTTCGGCCACCTGCCCCCCCTGGGTCTACGAGGTTGCCAAGAAATACATGAGACCAGAGTGCAAACATGTTGATCTGATTGGCAAGAAAACACAGAAAGCTGCAACAACTGTagaaCATCTGGCCATAGCGTGCCACTGGTCACAGCGTGCAGCCGTGATCGGAGATGTGATCCAGGTTTACAGCGGCAGCCATGGCAGAACCATCGTGTTCTGCGAGACAAAGAAAGAGGCCAATGAACTTTCCCTTAATGCATCCATCAAACAGAGCACCCAGTCCCTCCATGGTGATATTCctcagaaacagagagagattaCGCTGAAGGGCTTCAGGAATGGGGGTTTTGAGGTTCTGGTTGCCACCAATGTTGCAGCCCGTGGATTAGACATCCCTGAAGTCGACCTGGTGGTCCAGTGTTCTCCACCCAAGGATGTGGAGTCATACATCCATCGTTCAGGACGTACGGGCAGGGCAGGCAGGACTGGAGTCTGCATCTGTTTCTaccagaggaaagaggaggaccAGCTGCGCTACGTGGAAAACAAAGCAGGTATCACATTCAGAAGAGTTGGTGTCCCCACCGCCAACGATATCATCAAGTCATCAAGCAAGGATGCTGTCAGGTTTCTGGACTCTGTTCCAGCTGCAGCCATCGGGTACTTCAGAGCGTCAGCTGAGAAGCTGATTGAGGAGAGAGGAGCAGTCGATGCACTAGCTGCTGCCCTGGCACATATTTCTGGAGCCACAAGTCTAGAGCAGAGGTCACTGCTCAACTCTGATGCTGGTTACACCACTGTGCAGATGGTGTGTTCTCAGGAGATGCATAATCTGGGTTACGCCTGGAAATGCATCAAAGAACAACTTGGAGAAGAGTTTGAGAACCACATTCAGAGAATGACCTTCCTCAAAGGCAAAACGGGAGTTTGTTTTGATGTCCCAGCTGACAAAGTCAAGGAGATTCAGGACAGCTGGAAGGACGGTCGCCGTTGGCAACTGACTGTAGCCACCGAGCtcccagagctggaggagaaGCAGTTCAGTAACCGTGGCGACAGAGGCTTTGGCGGTGGTAGCCGCGGCGATAGAGGAGGAGGGTTCAGAGGTGGAAGGGGGCGGAGCTTTGGGGGAAATGGTGGCCGTAGTAACGGGTTCCGGAATGGTGGCGGCGGTGGTGGCTATAGCAACAGAGGAGGACACAAACGCAACTTCAGTCAAGCTTTTGATTATTGAAGTGCCAACCTGTGGGCTGGCTTATAATCTGTCTCCATAGGCTGAATTGTAAACTCTTACATATTCGAgtttcatatacagtacatgaaatGACCAATTGCATGTTATCTGATAAGTTGGATTTATGTCCAATTAGCCATTTCCTACTGGTTTAAGATCAGGTTttctgtgtacagtatattaagACCTGACCACTGGCAGCCATATTTAAAGGCCtgatgtgtgcttcttttaggTGACACAGTAATTGTTTCTGCTCTGCACACAATGAGAACAGTGATGAAACGGGTGTTAACCTTTAAAGTTGTGCTCAGTGTCCGATGGCTGCCTTACCCTCTGCTCAAACCTCTGTCCCCAAAGATGTATTGGATGATTGCGTTGCAATTGCCTCTATTTAATAACTGTGCCTAGTGCTTCCATTCATTTGAATGTAAagactaattaaaaaaaaggtcaacTCAG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K16911 DDX21; ATP-dependent RNA helicase DDX21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41059 lncRNA downstream 496463 29669808 ~ 29670355 (-) False LOC120556497
TU41061 lncRNA downstream 504730 29661668 ~ 29662088 (-) True G30905
TU41058 lncRNA downstream 548963 29617366 ~ 29617855 (-) False LOC120556497
TU41054 lncRNA downstream 550443 29615440 ~ 29616375 (-) True G30898
TU41003 lncRNA downstream 770135 29386757 ~ 29396683 (-) False G30852
TU41150 lncRNA upstream 100443 30279057 ~ 30288433 (-) True G30969
TU41201 lncRNA upstream 164802 30343416 ~ 30343902 (-) True G31013
TU41216 lncRNA upstream 229491 30408105 ~ 30410056 (-) True G31024
TU41220 lncRNA upstream 243076 30421690 ~ 30424323 (-) True G31027
TU41221 lncRNA upstream 244328 30422942 ~ 30424323 (-) False G31027
XM_039796142.1 mRNA downstream 201071 29617320 ~ 29965747 (-) True LOC120556497
XM_039794374.1 mRNA downstream 614345 29541607 ~ 29552473 (-) True rnaset2
XM_039794373.1 mRNA downstream 628083 29522758 ~ 29538735 (-) True LOC120555582
XM_039794467.1 mRNA downstream 705583 29402035 ~ 29461235 (-) True elp4
XM_039794529.1 mRNA downstream 791218 29352248 ~ 29375600 (-) False rcn1
XM_039794962.1 mRNA upstream 174814 30353428 ~ 30361232 (-) True tacr2
XM_039795713.1 mRNA upstream 263633 30442247 ~ 30446660 (-) True LOC120556252
XM_039795707.1 mRNA upstream 278626 30457240 ~ 30487984 (-) False rufy2
XM_039795708.1 mRNA upstream 278626 30457240 ~ 30486643 (-) True rufy2
XM_039795706.1 mRNA upstream 278626 30457240 ~ 30480833 (-) False rufy2
XR_005638738.1 other downstream 705582 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 897654 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 1319853 28770001 ~ 28846965 (-) False mafa
TU41279 other upstream 352137 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 2712885 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3163633 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3259849 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 3628322 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile