RNA id: XM_039795790.1


Basic Information

Item Value
RNA id XM_039795790.1
length 3582
RNA type mRNA
GC content 0.49
exon number 16
gene id spon1a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28985561 ~ 29064557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGTCAAACGTGTCCTCCTCATTGGTGGGaatgtttgtctttgttctCAGTCTGTTGGTTCAGAGTATTCTATAGTCTGTCTGTAAATAGCTGTGGCcttggagacacacacacagcgctcaTTCCTCTCTTGGCCATTTCCTCGAACCTTTGCTCTCCTGCTCAGTCTAACCAGCGACACAATTCTCGTAAAGCGAGAGAGCACAGCGCatcccagtcactcctccttcTCGCTCTCTGTTACTCAAACCAGGATGGATCTACCCTCCTAGCAGAGAAGAAATCTACTTCAGCAGTTGGCAAGTTGGGTTCTCATTTAGGAGTGAAACAGGAGCTTAAACAAACATTCTCCCCCAGACAAGATTTCCTTCATCTCCGCGCATCAACTTGGCTTTCGGAAACCTACATGATGACAGCAACCGGGCTACAATCGCGCTTTATTCTCCTGCTCTGCCTTATCTCCATCGCAGCGTGCAATATGTTTGCATTCACCGAGGAGCCCTCTGAGAGAGCCGGGAAGGGAGACGGGTATTGTAGTCGGATATTACGGGCTCAGAGCAATCGGAAGGAGGGCAACAGCGAGTTTCGCCTCCGCGTTGAGGGAGACCCGGAGAGCTATCAGCCAGGGAGCACATACAGAGTGACTCTGATTACATCCAGCCCCTCCTACTTCAGAGGGTTCACCCTTATTGCCCTGAAGGAGGGTGcagaaggagacagagaggaggactACATTGGAAATTTCCAGatAATTGATGAGGAGGAAACACAGTTCATGACCAActgcccccctgcagtgacagAGAGCACTCCTCGCAGACGAACCAGCATCCAGGTGTTTTGGACTGCGCCTCCCAGTGGCTCTGGTTGTGTCTCTATTAAGGCCAGTATTGTGCAGAAGAGGATAATTAATTTCCAGGATGAAGGCTTACTCACCAAGCGAATGTGTGAGAAAGAATCCCTGTATGGAGACACTACAGATAAACCTCTGCTCAGCTGTTGTGCCTGTGGAACAGCAAAGTACAGAGTCACCTTCTATGGGAACTGGTCAGAGAAGTCTCATCCCAAAGACTATCCACGTCGTGCCAATCACTGGTCAGCCATCATTGGTGCCTCCCACTCTGAGAAATATGTGCTTTGGGAATATGGTGGCTTTGCTAGTGATGGAATTAAACAGATAGCTGAGCTGGGTTCCCCTGTCAAAATGGAGGAGGAGATCAGACAGAAGGGTGATGACGTCCTGACAGTCATCAAAATGAAAGCACAGTGGCCAGCCTGGCAACCACTTAATGTGCGGGCCCCCCCCTCAGCCGAATTCTCAGTGGACCAGAGCCGTCACCTTATGTCCTTCCTGACCATGCTGGGGCCCAGTCCAGACTGGAATGTGGGTTTGTCTGCTGAGGACTTGTGTACCAAGGAGTGTGGTTGGGTCCAGAGGGTGGTCCAGGACCTGATCCCCTGGGATGCAGGAACTGACAGCGGGGTGACATATGAGTCTCCCAACAAGCCCATTGTGACCCAGGACAAGATCCGTCCCCTGACCAGTCTGGATCATCCACAGAGCCCTTTCTATGACCCTGAAGGGGGCGCCATCACTCCAGTGGCTAGGGTCATTGTGGAACGCATCGCCAGAAAGGGCGAACAGTGCAACATTGTGCCGGACAATGTGGATGACATTGTAGCAGATATTGCccaggaggagaaagaggaagATGATACCCCTGAGACGTGTATCTACTCCAACTGGTCTCCATGGTCCGCCTGCAGCTCGGCCACTTGTGAAAAGGGCAAGCGTATGAGGCAGAGGATGTTAAAGGCCCAGTTGGACCTTAGTGTGCCCTGCCCACACACCCAGGACTTTGAGCCTTGCATGGGGCCTGGATGTAGTGATGAGGATGCTTCCACCTGTATGTTGTCAGAGTGGATCTCCTGGTCTCCCTGTAGTTTGACCTGCGGGATGGGCACACGTTCCCGGGAGCGTTATGTGAAGCAGTTCCCTGATGATGGCTCAGTCTGCACCCAGCCCACAGAGGACACTGAAAACTGTGTGGTCAATGAGGAATGCTCACCCAGCAGTTGTCTGGTTACAGAGTGGGGTGAATGGGATGTCTGCAGCGCCACTTGTGGTCTTGGCATGAAGAGGAGAGAGCGCATGGTGAAGATGCCTCCTGCAGATGGCTCCATTTGCGGGGCAGAGGTGCTAGAAGTGGAGAAGTGCATGATGCCAGAATGTCACACAATCCCCTGCATGCTGACTCCATGGTCTGACTGGAGTGACTGCAGTGTGACTTGCGGGAAGGGTTCGAGGACTCGACAGCGCATGCTCAAGTCCTCCGTGGAGCTGGGCGAGTGTACAGAAGACTTAGAACAGGTGGAGAAGTGCATGCTACCAGAGTGTCCCATAGACTGTGTCATGTCAGATTGGACTGAGTGGTCGGAGTGCAATAGGTCCTGTGGGAAGGGTCATACTATCCGGACACGCATGGTGAGGCTGGAGCCTCAGTTTGGAGGAGACCCGTGTGCTGAAACCATCCAGAGGAAGAAGTGTAAGATCAGGAAGTGCAACCGAGGACAAGCCAACAGTGATGAGAAGAAACGACGCAAGGAACAGCGTGAAAAGAGGAGGAGCAAACAGGGCCGAGCTGAGGTCACCTCCGAGCATCCAGGGTGTAAAATGAGGCCATGGTCGAGTTGGACAGAATGTACCAAGCTGTGTGGTGGAGGTATTCAAGAACGGCTCATGACGGTGAAGCAGAGGTTTAAGACCGCCCAGCTGTCCAGCTGCAAGGACAGGAAGGAGATCAGGGCTTGTAATGTGCACCCCTGCTAGGAAGTAGTAGGGGAAACGGGGGTGGTGTTGAAGGGAGGAAGGGATGACAGTGGGGCTGGGAACAGCACAGGGCATGGCACGCTGTCACACAATGATCCAATGCACTCTGTTTAGGGCTGAAATGGCACATGCTTGAATCTGTCTTGGTTAAATCCAGAGCTCAGGTCAGTTGTCATCAAGAGAATTTGAACTCAAAGATCTCACTGGAAAACTCTGGATTTAAACTAGGCTGATTCTTCTGGTTTCAAACTAGCTCTTATACACATAAGACTCTTTTGCAAGATTACTGTAAACTTGTTGTGGTATAATATATCTtgaaaaatataattatgaaatataaattgatttaataaaaagataaagaaCTGTTATATATTGTGGTATCCTTAAGTAGTACAGTATATTCCAGACTTTAAAGCACAGGTGCCCAGCCATTCCAGTGTTTTATACGCCTTCAATTGTTCAGTTGTTTCTAGGACACAAAATGCCCAGTTGGCTTTTTACCCAGCTATATTGTTGTACATGTAGATGCACCACGATTGAGATCTATATTATTTTGAGCATTGTtagaacattttgttatttttttcctgtgaaatgTTTTGATAAGAATGTGTCCCAAGATTCTTACCAAAGTCTTGTGTAGATGTTTTCTAGatgtctcctcctccttttcttctctgttCCTCTAACATATTAATATTTTGGAATAATATCACCTTTACAATAAAAGTAAACGTGACAACTgga

Function

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40784 lncRNA downstream 316597 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 435561 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 593043 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 760114 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 926393 28046759 ~ 28059168 (-) True dbndd1
TU40860 lncRNA upstream 75797 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 153298 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 245993 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 249401 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 249401 29313958 ~ 29314646 (-) False prrg4
XM_039794057.1 mRNA downstream 21888 28941368 ~ 28963673 (-) True syt9a
XM_039794058.1 mRNA downstream 21888 28945802 ~ 28963673 (-) False syt9a
XM_039795884.1 mRNA downstream 47618 28916661 ~ 28937943 (-) False ppfibp2a
XM_039795886.1 mRNA downstream 49565 28916661 ~ 28935996 (-) True ppfibp2a
XM_039795889.1 mRNA downstream 49572 28916661 ~ 28935989 (-) False ppfibp2a
XM_039794118.1 mRNA upstream 62231 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA upstream 62231 29126788 ~ 29135762 (-) False LOC120555430
XM_039794163.1 mRNA upstream 90415 29154972 ~ 29216343 (-) True kiaa1549lb
XM_039794164.1 mRNA upstream 91357 29155914 ~ 29216732 (-) False kiaa1549lb
XM_039794168.1 mRNA upstream 153296 29217853 ~ 29269183 (-) False LOC120555471
XR_005638770.1 other downstream 138596 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 138596 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 138596 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 315693 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 983091 28001640 ~ 28002470 (-) True G30577
TU40901 other upstream 193421 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 338197 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1466194 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3826942 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4277690 33342247 ~ 33348090 (-) True wdr76

Expression Profile