RNA id: XM_039795884.1


Basic Information

Item Value
RNA id XM_039795884.1
length 4006
RNA type mRNA
GC content 0.47
exon number 23
gene id ppfibp2a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28916661 ~ 28937943 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCAAATGGATGACATTATTGCTGGCAAAATGGGTGAAGGGCTGTTCAGTGCTCTTATGCGGTTCGGTGGCCAGGATTGCCAGGCCTCAGAGGGTACCTCACAGTTGGCCCTTGCCACACTTGTGGACCCTGCCCTCAAGACTCTCCAACTGACTGAGGCCCTCAGGGCAGTGCTGGAGGTTCAAGGAAGTGATGAAGAACAGGACTCTCTCAGGAAACATGTCTCCACTAATACAGCACATGTAATATTAAAATGGCTGAAGAGAGATGAGGTAAACCTCCATTCATCTGGCAATAGTGAGTCCTACCAGGAACGGTTATCACGTCTGGAGGGAGACAAAGAGTCACTTATTCTGCAGgtaAGTGTGCTGACAGACCAGGTGGAAGCTCAGGGGGCCAAGATCAGCGATCTACAGAGTTCTCTGGTGGAGCATCAGCACAAACTCAACTCCACTGAGGAGATGCTACAGCAGGAACTCCTGCATAGGACGTCACTGGAAAACCAGAAGTTGAATCTTATGGGGGAGGTGTCCTACCTGAAACTAAAGCTGGCAGACATGGAGGGAAAACAGAGCCATGGAGCTGAAAGGCAGCACAAAGCAGAGACTGTAGTGAATTTCATTAGTGAGCTGCAGGAGCAGATGTGTAGGTTTCAGAAGGAGATCAATAGCAAGATCCAGGAGAAAAAGGCCTTGGAGATCCCGGCTGACAACAGCTCTCCAGTGTCGTGCGGCTCGTGCCCCACGGAGTCCACCGAGGGCGAGGGATCAACCATCGGGCCGTCCTGTGACAGAAACCCAGGCTTGATGCACAAACTAGAAGAGGCTTCAGATGGGCCTGATGGGAATGCACACAACCTGGAAGGTGGTAGCTCAGATGCAGAGCAGCAATACTACTGTGGAGAAGAAAGTGGCTTACTTAAAGAGCTCAGGATTCTCAAGGACAAAGTGGAGCACCTGGAGGATCAGAAGTTACACTATGAGAAGAAACTCAAAGCAACAAAGGCAGAgatcagcagccttcagcagctTCTGCTCAGTAAGAACGCTGAGATCGAGAGCTTGCACAATCAGCTGCTGGCCAGATCATCTCCATCCCCTGAGAGCTCGGAGAGAGATCAGGAGCTGCAGAACCTTAGGAGTGGAATGAAATCACTGACCGCTGCTAATGATGAAAAGGACAGACGTATCGAAGAGCTCACTCTGCTCCTGAATCAGTGCAAGCAATTCAGAGAGGTCACTCACACCACAAGGCAAGCTCCACCTGCTGTTCGTTCATTGTCAAATGGTAGGACTCCATCAAGCAGCAGTGATGAAGAGGCGCACGTACTGATGAAGAATACTGACTCTGCCAGTGCAAAATCAGTGGATGTAAAGTCTGAAGTTTCCACAAGCAGTTCTTCCTCCCAACAAACATCTATTTCATCAGCCCAGAAGGACAGTGATTCCAGAACAGAACCACAGACCTTCTCAAGTAGTATGAACGACCTAACAAATGCACCTTTACAAAAGAGTGGTCTGGATGACACCAGAAGTCAGACGCTGCCTGTGAATTCCTCTCTGTCAGAGCAGAATGGGAGCGAAGACAGCAGCAGCGAAATACAGAGTCAAAGGTCTCCAGATGGGAGTGAAGATGGAGACTCCAGCCAAAGAAAGTTGGAGAAAGTCGATGACAGCACTTCAAGTGATAATTCCCCTGTTCATTCTGGAGCAAACACACAACCTGGCCAACGGGCTGTGGGCTCACCAGAATACATGAAGAATAACAGGAGCTTTAAAAGGCTCTGGGGAAAACTTCGAAGAACCCAGTCTGGAGGGCTCCAGGCAGCGGATCCAGATGCCGGTCAGTTTAGAAGAGGTGGACTGCGTGCGACAGCAGGACCCAGACTGACCAGGACCCCCGAATCTTATGACTCTGCACGtGATATGAATGTTCCATTCAGCCAGTGGACCAAGGAGCAAGTATGTGGCTGGCTGGAGGACTATGGACTGGGCCAGTATGTCAATCTCACCAGGCAGTGGGTTGAAAATGGACAGATGCTGCTGTCTGCCACACCTCAGGACTTTGAGAAGGAGATGGGTATGAAGAATCCACTGCACAGGAAGAAGCTGCAGCTTGCTCTGAAGGCATTCACCACTAAAGTTATAGAGAAATCGTCAGAGCTGGACTACATCTGGGTCACCCGCTGGTTGGATGATATTGGTTTGCCTCAGTATAAAGACCACTTCCATGAAGCTCGAGTGGATGGTCGAATGATACAATACCTCACAGTGAATGACCTCTTGACTCTAAAGGTCACCAGCCAGCTTCATCATCTCAGTATTAAATGTGCCATCCATGTCCTTCATGCCAACAAGTTCAACCCCAACTGTCTTCGACGTAGGCCAGGGGAAGAGAAACAGCCCTCTCCCTCAGAGGTGGTGCAGTGGTCTAACCATCGCGTGATGGAGTGGCTTAGAGCAGTGGATCTAGCTGAGTATGCCCCCAATCTACGGGGCAGCGGTGTTCATGGTGGGCTGATTATCCTGGAGCCTCGCTTCAGCTCAGAGACTTTGGCCCTGCTGTTAAATATTCCTCCGCAGAAGACTTTGCTGCGCCGCCACCTCGCCACTGCCTTCTCTGCCCTGGTGGGGCATCAGGCCACGCAGGAGAAGCGAGAGTATGGCAATGCCACAGGCCACGTGCCCCTCACTACCACTGCTAAAGTAAAGcCAAAGAAGCTGGGTTTCACTCAATTTAGTCACCTCAGGAAGAGGAAACCTGATGAATCTGCGGACTATATCTGCCCAATAGACACTGGAGCGTTGACAGTGAATGGAGTTTCTCGCTTGCCCTCTGCAGCACTTAGGGGCCTTAGCCCCAACTTggacagacagactgagaggCGCGAGCAGGTGGGGATAAAAGCTCTGGCTAATAGCCCAaaacaataatttaaaaaatacagcATACTCCCCTATCACTCTCTAAGTGACTTTGCGAATCAGTGGAAATTCTGATGCAGAAAAGTACCCAAGATTAATCCATGAGGTGACTTGCTGGATGGGCTGCAAAAATGCTGTGTTAAGCAGGTGATGTTAATTGttgttaatgtatttttaacCAGATGTTGCTTAATGCAACATTCATCTAAAATGGTGATGAAAGGTGACATTGTGTTAAATGTTTTATGAAAGCTGCTCTCTGCATTCCATCTACATTTGGATTCCACAGCTTCTACTTATGCATTTTACTGACCATTTTGTATCTAAACGTCTGCAGATTAAGTTAGAATGTTGATGACCATTTCTTGTTATATATCTGGATTGACCGCACAGTATAATAAGTGACACCAGTTACTTTAAGAATGTCTTCGATTCATCTTCTGtatgaaaaattaaataattttgtttCTTGACAATACACTTACTCTTCTGCACCTTCGAATCAGGTTTGTTTGTATAGAATTCTCCTATCCAAATGTTGCCTTGTTTCATTGATCATTATGAATATGCAGTAATATAATAAGCACCAGGTCAACAGTTACCATAGTCTTGTTGTAATTTTGGAGACCATCAAAGCAAATGCTTTTGCTGCCATCTGGTGCTTAAATGCGTACCActgtctctaaacagcttcatCAAATTTCAGCTCAATTATTGCATACAGGACTTATGTGAGTAACAAATGCAGTTTACAAGTTTATGTTTTGAGACTTTTTAATTTCAGAAAATTATTAGCATTGGTGCAGTATATTTCATTATAGTTAGAGAGACACCCCACTTCCTGAGGATGGATCTTAGGATCTTAAATGTGCAGTTGATCTAGGACTGCCCACTACTGGTCAAAAATCAGAAATACAAGAATGATTGGCACCACACTATTGTACAGGAGGTTTGGTTTGTGCCAGCCCAGGTTCTTTGAAGGGGAGGAGCCTTAATAGCTGCCATAGCAGTCAAGACTGCAATATAATCTGTTTTGATTTGGTTGGTGagttaatgaaaataaatgaatcaaataATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40784 lncRNA downstream 247697 28668598 ~ 28668964 (-) True G30691
TU40758 lncRNA downstream 366661 28447956 ~ 28550000 (-) True LOC120555801
TU40721 lncRNA downstream 524143 28342700 ~ 28392518 (-) True G30644
TU40708 lncRNA downstream 691214 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 857493 28046759 ~ 28059168 (-) True dbndd1
TU40860 lncRNA upstream 202411 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 279912 29217855 ~ 29237426 (-) False LOC120555471
TU40938 lncRNA upstream 372607 29310550 ~ 29313809 (-) False prrg4
TU40940 lncRNA upstream 376015 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA upstream 376015 29313958 ~ 29314646 (-) False prrg4
XM_039795058.1 mRNA downstream 69696 28770001 ~ 28846965 (-) False mafa
XM_039795059.1 mRNA downstream 69696 28775975 ~ 28846965 (-) False mafa
XM_039795060.1 mRNA downstream 69696 28828634 ~ 28846965 (-) False mafa
XM_039794832.1 mRNA downstream 409420 28478868 ~ 28507241 (-) True LOC120555776
XM_039794114.1 mRNA downstream 447018 28466025 ~ 28469643 (-) True cenpn
XM_039794057.1 mRNA upstream 3425 28941368 ~ 28963673 (-) True syt9a
XM_039794058.1 mRNA upstream 7859 28945802 ~ 28963673 (-) False syt9a
XM_039795790.1 mRNA upstream 47618 28985561 ~ 29064557 (-) True spon1a
XM_039794118.1 mRNA upstream 188845 29126788 ~ 29136061 (-) True LOC120555430
XM_039794119.1 mRNA upstream 188845 29126788 ~ 29135762 (-) False LOC120555430
XR_005638770.1 other downstream 69696 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 69696 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 69696 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 246793 28669191 ~ 28669868 (-) True G30693
TU40633 other downstream 914191 28001640 ~ 28002470 (-) True G30577
TU40901 other upstream 320035 29257978 ~ 29269164 (-) False LOC120555471
XR_005638738.1 other upstream 464811 29402754 ~ 29461236 (-) False elp4
TU41279 other upstream 1592808 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3953556 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 4404304 33342247 ~ 33348090 (-) True wdr76

Expression Profile