RNA id: TU62879


Basic Information

Item Value
RNA id TU62879
length 442
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G47002
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3865355 ~ 3865796 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGCCcagaggagatgctactttcaaaaTTTGCTAGCTTCACAActttaccaaccctgccttttaAGATCGTCCTTTTTAAATGTCTCTACGTGGCTAAAAAACTGAACAAAAAGAGACCCTCTTTGGATAGAGTGCTGTGTCATGGACCCGTGAAACAATTTTGTCAAGTACCAAAATTTAAACTAATGAAATAGGTGGCTTATGGGTTAAGATGTCAACAGCAACATCCCTGGTTTAACTCTGCCTGGGGACCTTTTGTAACTAATCCAACATTAGGGATGTCATTTCCAGCAAAATTCCACGATTCTCAACACCCAATTTGATACCAcagtaaaaaactaaaacaaaacccATGTACTTATACATACACTCCTATTATAATGTGTATTTTAGGATAAGGATAACAAGGATAACACTTTGTTCagtgtcatttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62878 lncRNA downstream 51 3862608 ~ 3865304 (-) True G47001
TU62876 lncRNA downstream 21692 3843148 ~ 3843663 (-) True G46999
TU62872 lncRNA downstream 34173 3830759 ~ 3831182 (-) True G46995
TU62853 lncRNA downstream 160966 3704021 ~ 3704389 (-) True G46979
TU62775 lncRNA downstream 346686 3518437 ~ 3518669 (-) True G46920
TU62881 lncRNA upstream 7755 3873551 ~ 3873769 (-) True G47004
TU62882 lncRNA upstream 10404 3876200 ~ 3877357 (-) True G47005
TU62915 lncRNA upstream 13276 3879072 ~ 3926019 (-) True G47033
TU62928 lncRNA upstream 63343 3929139 ~ 3929439 (-) True G47042
TU62929 lncRNA upstream 64514 3930310 ~ 3930663 (-) True G47043
XM_039801131.1 mRNA downstream 55450 3771053 ~ 3809905 (-) True foxp3b
XM_039801129.1 mRNA downstream 119742 3736744 ~ 3745613 (-) False trappc6b
XM_039801130.1 mRNA downstream 119744 3735499 ~ 3745611 (-) True trappc6b
XM_039801122.1 mRNA downstream 236582 3564509 ~ 3628773 (-) True LOC120559443
XM_039801134.1 mRNA upstream 14514 3880310 ~ 3909770 (-) False LOC120559452
XM_039801135.1 mRNA upstream 14514 3880310 ~ 3909548 (-) True LOC120559452
XM_039801137.1 mRNA upstream 48197 3913993 ~ 3928156 (-) False si:dkey-16n15.6
XM_039801136.1 mRNA upstream 48197 3913993 ~ 3928155 (-) True si:dkey-16n15.6
XM_039801593.1 mRNA upstream 69512 3935308 ~ 3950171 (-) True LOC120559679
TU62665 other downstream 579432 3283041 ~ 3285923 (-) True G46817
unassigned_transcript_223 other downstream 920431 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 921028 2944256 ~ 2944327 (-) True trnaq-cug_2
TU62526 other downstream 1517851 2346505 ~ 2347504 (-) True G46698
XR_005639247.1 other downstream 1529654 2334724 ~ 2335701 (-) False LOC120559407
TU62955 other upstream 89230 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 89808 3955604 ~ 3956382 (-) True G47059
TU63179 other upstream 864705 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 867000 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 2830649 6696445 ~ 6721729 (-) True G47624

Expression Profile