RNA id: TU62952


Basic Information

Item Value
RNA id TU62952
length 1074
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC120559679
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3934511 ~ 3950171 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGAACGAAGATATCATTGGTTGTAGACTTAGTCCCAGGCCATCTTGGAATGAACTTTGATGATTTTGATTGCGTTGACCATGGGAGTCTCTTGAGAAGATCTGCTAGACCCAGCACAGGCTGTCTGTCACAGGCCAGCCTAGAGCGGGATCTAtacttctgcgtaaaatctacgCTGTTGCTACGTAcataggtacgtggagacacaaacctacgccgtagcctgacgtgcacctctcgaaaaatgtaactacatgttagggctgggtacccaattcaatactttttaggcaccgaccgaattgcctctaaagcaTCGattatcgaaaaatgcctcgtcattcaataccctatttcaatacctaagtagtaaatctcatcagcgtcagggagccaataagcacacagcatgtttctacctaataatgtctgtgattggctgtttaacgttacacatcgtagagacacgcaggaaaaactgtaatttcctttttgtttcataaaattggtattgaaaaaaggAACGTTTAGGAACCGGTGTCAAAGTCACAGTATTTGTATCCgtactgaaatgtttttttaacgatacccagccctaactgcacgtcgctcggccgtggcttggtagcgttgcatttcccagTTCTACGTAAACGTGAGATAAAGgcgagggttaacttttcccgctacagatttcccaccgtggttcagaaagaacaggggagacacttctCACTACGACTCtggagtcactactcgctccgaagctaatcgctgtCACTCCCTCACTTTCTCCCTCGGTCTACCAcgcactccacacacacacctgccggctcgacgcacacaccaacgcacaagaataaacatcaggccacttaacGTAGGCTACgccgaaagctctgcgtggagcctccgcaggaccATAAATCACCCTTAACTGTCTACAGACAGCATGTCCCTGTAGGATTGGGTCCGTTGTAATGTTGGTGTTGGATAATGTCCCGAAACATTTCAGCAGTTTAGCATGCCTCGACACATTTTTTAAAGGGCCCATAACTGTAATTATTcataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62929 lncRNA downstream 3848 3930310 ~ 3930663 (-) True G47043
TU62928 lncRNA downstream 5072 3929139 ~ 3929439 (-) True G47042
TU62915 lncRNA downstream 8492 3879072 ~ 3926019 (-) True G47033
TU62882 lncRNA downstream 57154 3876200 ~ 3877357 (-) True G47005
TU62881 lncRNA downstream 60742 3873551 ~ 3873769 (-) True G47004
TU62981 lncRNA upstream 31192 3966776 ~ 3969129 (-) True G47083
TU62991 lncRNA upstream 45593 3981177 ~ 4012698 (-) True G47091
TU62993 lncRNA upstream 114926 4050510 ~ 4059713 (-) True G47092
TU62994 lncRNA upstream 117133 4052717 ~ 4055342 (-) True G47093
TU63032 lncRNA upstream 261204 4196788 ~ 4197049 (-) True G47122
XM_039801137.1 mRNA downstream 6355 3913993 ~ 3928156 (-) False si:dkey-16n15.6
XM_039801136.1 mRNA downstream 6356 3913993 ~ 3928155 (-) True si:dkey-16n15.6
XM_039801134.1 mRNA downstream 24741 3880310 ~ 3909770 (-) False LOC120559452
XM_039801135.1 mRNA downstream 24963 3880310 ~ 3909548 (-) True LOC120559452
XM_039801131.1 mRNA downstream 124606 3771053 ~ 3809905 (-) True foxp3b
XM_039799344.1 mRNA upstream 16717 3952301 ~ 3954770 (-) True LOC120558369
XM_039799380.1 mRNA upstream 47689 3983273 ~ 4005648 (-) True asxl1
XM_039799379.1 mRNA upstream 47689 3983273 ~ 4002811 (-) False asxl1
XM_039799382.1 mRNA upstream 47689 3983273 ~ 3999133 (-) False asxl1
XM_039800534.1 mRNA upstream 347604 4283188 ~ 4381061 (-) False LOC120559100
TU62665 other downstream 648588 3283041 ~ 3285923 (-) True G46817
unassigned_transcript_223 other downstream 989587 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 990184 2944256 ~ 2944327 (-) True trnaq-cug_2
TU62526 other downstream 1587007 2346505 ~ 2347504 (-) True G46698
XR_005639247.1 other downstream 1598810 2334724 ~ 2335701 (-) False LOC120559407
TU62955 other upstream 19442 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 20020 3955604 ~ 3956382 (-) True G47059
TU63179 other upstream 794917 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 797212 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 2760861 6696445 ~ 6721729 (-) True G47624

Expression Profile