RNA id: TU62994


Basic Information

Item Value
RNA id TU62994
length 2519
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G47093
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4052717 ~ 4055342 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acggttgagtttaggaaacgggACACGTGGAAGACGAAGGAAACGGGACACGCGGGatacgatccccggtctcctgggtgaaagtcctgtgttgtttgacccatccaccaccccgaccaacctccctatggggattttcgccctttcgtACTACTCTCTATCACAAGGTAATGttagtcaatggaggccaaacagcgttgataaacacgctaaaaagcgagcaTGCATCTTGATAACAAAACGAATTGGCGTTTCACACATACGCCACTTcttgagatcagtctgacatttatttactcTAATCATTAACGTGACTGCTGTTTATCTCCAAATCTAAATGACTGTCTGCCCCGCCGACCGTGTTGAACTGAAAGCCCACGTAGCTACAAAAATTCAGAGGTGCACGAACACACGCCGCGACAGCTTGCGGAGCCTTCGCCACAGCCGTGGTGACGTCATTTTATGGCGCTCGCAACAATTCCGCAGCTACCATCTGCAAGTTGATGACGAGACTCTTCttgtatattttacatatttccATTGTAGCACTGCAACTCACCGAGCATTTATCACACAATCTGGAATGGCTCAAAACCTGACTGAGACCGATTGGATGAGCTCAGACATTGTGACATACTGTAGACATAGACCTGTGAGATCACAGTTATCACTAATATGAATCAACCTTGTGGTTACCACAAAGAGCCCTCCACATGAGATTTATATTAGgggtttgcaaaaaaaaaaaatcgattcacattcgtatcgcaattcaagctctaccgattcaaaaatcgattcatagcattccatagatagatagatagatagaccaaaagtttggacacaccttctcattcaatgcgttttcatgacatatttacattgtagattctcactgaaggcataaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcctcaaagtagccaaccTTTGCTTTTtcgatagcgctgcaaacccttggtgttctctcaatgagcttcatgtggtagtcacctgaaatggttttcacttcacagctGTGCCTTGTcaggttaattagtggaattttttcccttattaatggtgttgggaccatcagttgtgttgtgcagaagtcaggttgatacacagccgacagccctattggacaactgttagaattcatattatggcaagaaccaatcagctaagtaagaGAAACGAGttgccatcattactttaacaaatgaaggtcagtccggaaaattgcatCATTGAATCGAAAAtcaattttgaatcgaatcttgagcctaaaaatcaatatcgaatcgtgacattttctgaatcgtgcacccctaataTATACAATGGTGCACTGCACATCACAGACCGTTAGGAAGCCTGGAGAATTAAAACCTTGTTGTTGAATGTGATTCCTGATTAGCCCCACCAATCTGTCTGGCTGCGTATGTGTTGCCTGAGTGTGTCACGTGCTTACCGCAGCAGCTTGGCCTTACTCTGAAGGCTATCCAGCAGCTCCATCTTGCTGTTCATGTCGGTGATCTCGTCTTCCAGGTTCTGACGGGTGACGTCTACCTGCTGGCAGAGCTGAGCAAACACACCTGCCAACTCCTGCTGGACTTGGTGGCTGCAGTTGGATCCAGTGTAGCTGACGATGAGCTGCAGCTTCTCGCTGGCGTAGTCCACAAACTGTCTCTTGAAGGCTCTCTCCTTGGCCTTGGTGGTCCAGGTGAGCCGCTCGTAGATGTAGAGGAGTCCGTACAGACCCACTGACAGGGCGATCAGACGCCAGCCCACTGCCTTCCAGATCTGCACACACCATCACAGCTTTTGGTCTGGCTCAACCCTCCTCCCTTTCATATCTAAGCACAATCTGACTGCAAATATTTCAGCTGCTGTGACATGGGTCCAGCTCCGTCAACATTACTGTCGGATGATGGTCGCACAAAAAGCTATTTGACTTTAAATCAACCAAGCATGAAGAGATCAGTTAATTTTAATGTATCTGGTCTGGAGTCCTCATAATAAATGGCATAAGATGTGCATTATGTAATGAGCAATGTGCAAACGTGCATCATAAAAGGAAAAACACCCCTTAGTCCACATCTCACTTTGTCCTCTTTACCCAGGCCTTTATTCCTCAtcagtttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctcaccACGCCGCCAACCACAAGGACACCCATGGAGGTACGAGATGTAAGGGAAGCCAGCCCAGTCACCATGGAGACCATGAGCTCCTCCTGGGTGACGGAGCTCTGGGGGAACGGAGGCATGCTGCTGCTGACAGGAGTCAGAGCCAGGGGCCTGGGCACCTACagggggaacacacacacacacacacacattcagggagggagggatgttCTGGGCCCATACACATACCCAGGTCCTGCTGTTGATGTTACCCTTCATGTGGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62991 lncRNA downstream 40019 3981177 ~ 4012698 (-) True G47091
TU62981 lncRNA downstream 83588 3966776 ~ 3969129 (-) True G47083
TU62952 lncRNA downstream 117133 3934511 ~ 3935584 (-) False LOC120559679
TU62929 lncRNA downstream 122054 3930310 ~ 3930663 (-) True G47043
TU62928 lncRNA downstream 123278 3929139 ~ 3929439 (-) True G47042
TU63032 lncRNA upstream 141446 4196788 ~ 4197049 (-) True G47122
TU63077 lncRNA upstream 335927 4391269 ~ 4391763 (-) True G47162
XR_005639158.1 lncRNA upstream 406445 4461787 ~ 4462206 (-) True LOC120558635
TU63144 lncRNA upstream 536444 4591786 ~ 4621762 (-) False dedd
XR_005639157.1 lncRNA upstream 570621 4625963 ~ 4628523 (-) True LOC120558634
XM_039799380.1 mRNA downstream 47069 3983273 ~ 4005648 (-) True asxl1
XM_039799379.1 mRNA downstream 49906 3983273 ~ 4002811 (-) False asxl1
XM_039799382.1 mRNA downstream 53584 3983273 ~ 3999133 (-) False asxl1
XM_039799344.1 mRNA downstream 97947 3952301 ~ 3954770 (-) True LOC120558369
XM_039801593.1 mRNA downstream 102546 3935308 ~ 3950171 (-) True LOC120559679
XM_039800534.1 mRNA upstream 227846 4283188 ~ 4381061 (-) False LOC120559100
XM_039800533.1 mRNA upstream 227846 4283188 ~ 4381061 (-) True LOC120559100
XM_039800538.1 mRNA upstream 227846 4283188 ~ 4381020 (-) False LOC120559100
XM_039800536.1 mRNA upstream 227846 4283188 ~ 4380883 (-) False LOC120559100
XM_039800535.1 mRNA upstream 227846 4283188 ~ 4380882 (-) False LOC120559100
TU62956 other downstream 96335 3955604 ~ 3956382 (-) True G47059
TU62955 other downstream 97188 3955026 ~ 3955529 (-) True G47058
TU62665 other downstream 766794 3283041 ~ 3285923 (-) True G46817
unassigned_transcript_223 other downstream 1107793 2944853 ~ 2944924 (-) True trnaq-cug_3
unassigned_transcript_222 other downstream 1108390 2944256 ~ 2944327 (-) True trnaq-cug_2
TU63179 other upstream 675159 4730501 ~ 4731141 (-) True G47252
TU63181 other upstream 677454 4732796 ~ 4733285 (-) True G47254
TU63619 other upstream 2641103 6696445 ~ 6721729 (-) True G47624
TU63635 other upstream 2748799 6804141 ~ 6805706 (-) True G47638
TU63670 other upstream 2899862 6955204 ~ 7036375 (-) True LOC120558602

Expression Profile