RNA id: TU63642


Basic Information

Item Value
RNA id TU63642
length 560
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G47641
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6826253 ~ 6827520 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccatacatacccttctcatctccgtgcgtgtcgtaactctgtctgacgcacccaccgctagcctagcttagcacagatcctggaggtaaccggctcaatctagcctactgctcctaataagtgacaaaataacgccaacattttcctatttacatgttgtgatttgtatagtcacagcgtgtacaaataacaaggtcacatgagacacagccatcttctaaccgtatataaactgggaactatattctcagaaggcgaagcactgctacttctgctacttgggcggagtgatttgcttgcagcacctgagaagccccgtggtgaggagcagagagaaacaacggtgcttttcaggtgttgcgctaatcactccgcccaagtagcagtgctacTAGTGTTACCGGCACCAGGCCTAGGGGAAATCTGGACCGGCAGCAATGGCTACACAGGCTAGGAAGCACTGCGTAGCTTAAGAAAACTGGGAACTGTGAATCAATAGATAGAGAG

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63455 lncRNA downstream 254129 6571892 ~ 6572124 (-) True G47498
TU63441 lncRNA downstream 452710 6366360 ~ 6373543 (-) True G47485
TU63409 lncRNA downstream 589415 6232908 ~ 6236838 (-) True G47459
TU63397 lncRNA downstream 684364 6118484 ~ 6141889 (-) True G47447
TU63387 lncRNA downstream 789755 6036255 ~ 6036498 (-) True G47439
TU63669 lncRNA upstream 127684 6955204 ~ 6962388 (-) False LOC120558602
TU63671 lncRNA upstream 134968 6962488 ~ 6967475 (-) False LOC120558602
TU63672 lncRNA upstream 134968 6962488 ~ 6967475 (-) False LOC120558602
TU63685 lncRNA upstream 222228 7049748 ~ 7270452 (-) False LOC120558809
TU63687 lncRNA upstream 223794 7051314 ~ 7051795 (-) True G47677
XM_039800050.1 mRNA downstream 2717 6816707 ~ 6823536 (-) True LOC120558793
XM_039800051.1 mRNA downstream 2719 6816707 ~ 6823534 (-) False LOC120558793
XM_039800052.1 mRNA downstream 2723 6816707 ~ 6823530 (-) False LOC120558793
XM_039801854.1 mRNA downstream 398330 6406363 ~ 6427923 (-) True tcea2
XM_039801403.1 mRNA downstream 1084300 5738321 ~ 5741953 (-) False LOC120559579
XM_039799655.1 mRNA upstream 165 6827685 ~ 6838050 (-) True LOC120558600
XM_039799656.1 mRNA upstream 18515 6846035 ~ 6848369 (-) True LOC120558601
XM_039799657.1 mRNA upstream 127718 6955238 ~ 6964792 (-) False LOC120558602
XM_039799688.1 mRNA upstream 469046 7296566 ~ 7299426 (-) True LOC120558623
XM_039800065.1 mRNA upstream 492505 7320025 ~ 7359408 (-) True LOC120558800
TU63635 other downstream 20547 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 104524 6696445 ~ 6721729 (-) True G47624
TU63181 other downstream 2092968 4732796 ~ 4733285 (-) True G47254
TU63179 other downstream 2095112 4730501 ~ 4731141 (-) True G47252
TU62956 other downstream 2869871 3955604 ~ 3956382 (-) True G47059
TU63670 other upstream 127684 6955204 ~ 7036375 (-) True LOC120558602
TU63848 other upstream 657907 7485427 ~ 7487060 (-) False G47814
TU63850 other upstream 657907 7485427 ~ 7498802 (-) True G47814
TU64005 other upstream 944416 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 987631 7815151 ~ 7886850 (-) True G47937

Expression Profile