RNA id: TU63670


Basic Information

Item Value
RNA id TU63670
length 3040
RNA type TUCP
GC content 0.39
exon number 5
gene id LOC120558602
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6955204 ~ 7036375 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaatagcattatgcacagtgaggagtctgcaagccttacaagcttcacatattagaaaaataatacaatacaataatacattttttatttttttaatggctcgttatcaaggttgtttcagatcaccACCTGccagtgaccactaggtgtcatcgttgagacgggtgtcagattgtttcgaagcctcgacacaatatgacacatttgcttcaactgtttcattgtttcacgaagcctcgatctgcccaccactacacaaaggcgggaaagcacaagacaggaagtaaaacaagacatgacatgggagaaaaccgactacaaaataaaacaggaagctgaagcataaaacatacacaaggaaGAAAACAGGGTAAAACGCAACAGAGAACACAAGAGACAGTAAACAACAAGGAAACGGGGAACAAATTAACACAATTAAACAGGAAAACTATAATAGAAAATCGCAATCATGAcaagaacagccaataggaactctctctctctctctctctctctctgaaatgacctgtgattggccaaagtctcccgtcacaggctagattttctagaggaggtgcagaagtctagttttctgtcagagcacttgaattacaatatgctgaaagatgATTGGAATATTGGAATGGATATATGGAATCTTCGCCTAATAACACCCCAAAAAATACTGCCTATCCCAGCTTCAAAGTTCTGCATAATTAGGGTGTGGCTACGTTGAGTGACAGGTGGGTGACCTTACAGGTGGCTAGCTGCTTCTTTTCTGCTAGAGCCAAGAGATTAGATTATCTTAATTATTGTATAATGTGATTTAGTTCAACCTTTTGaatttaaaagattattttaatGAGTCGTGCTGATGCAACAATAATGGTTACTGCCAGAAAACTACCAATGTTCAATTCATACAAAGTTCATAAATATGTAAATTACCATTGACTATTTGGTATCAGAAAATCAGGAACTTTAAATTGTACAGGCTGGTTCTCATGATGACTGGATGGCTGGATTCAGCACCTAAACACATTCACTACAGTTTGAAAAGTACagaataaatacagtatataataatataatatacagtactgtgcaaaagtcgTAGGTAGTtgtgaaaaaactaaaaattctttcaaaaatataaatgattgttttttttttatcaatttacaaaatgcaaagtgagggaccaaagaaacatttaaatcacatcaatatttggtgttactaccctttgccttcaaaccagcatcaattcttatagttacacttgcaaaaagtcagggaacGTTGAGGATCATAGACGCAGTGGTCGGCCAAGGAAActtgaaaaacacatcaagcttaTTTCCCATTGAAATcggaagatgtccagcagtgccatcagctcagaactggcagaaaccagtgggacccaggtacacctaCTATCTGGAGAAGTCTGGCCAGAAgtggtcttcatggaagagttgCGGCCAACAAGCCATACCGCCGACATGCACAAGCGACTCAACtatgcacaaaaacataggaactggggtgcagaaaaatggcagcaggtgctctggactgatgagtcaaaatttgaaatatttggctgtaACAGAAGGCAGGTTGTTCCCCGAAGGGCTCGAGAGCGGTACAAtaatgagtgtctgcaggcaacagtgaagcatggtggaggttccttgcaagtttggggctgcatttctgcaaatggagtttgagatttggtcaggattaatggtgtcctcaatgctgagaaatacaggtagatacttatccatcatgCAATACAATCAGTATGATTGGCcccaaatttattctgcagcaggacaatgaccccaaacatacagccaagCAAAGACCTGGATCGATGCAGAGACCTTCTGCATCTCCACTGGTGGGAATCTGGCTTCAATCCACTCAGATGAGGAACATAAATTTATCAAAGACTTCATTAACCAAGTGACCGGTACTGACAAAAATGCTTGGATCGGAGGCAGTGACGCAGTGCGGGCGGGTACATGGTTGTGGAACGATGGATCCAACTTCAACTACAAAAGCTGGGCTGCGGGGGAGCCTAACGCCATCGGAGTGGATCACTGTCTTATGCAGAACTGGGCTTTAGTAACCGGCTGGTTCGACGGGACTTGTACCACCCAGGCTTCTTTCGTGTGCTCCAAGAACCTGTTACTCTAACGCGCTATCATGATGCCTCTACAACTCATCTATAATTTCTATCATTGATTCCTTTTCAGTTTGTTCGGCAGACAGAACCAGCTCTCTGCCAACAGATGACTCACTTTCACTTGTTTATTATCTGAAGAGTTAGGGAAGAGTTCACATTTGGGTTCAAAATTAGACAGAAATTGACTCACTGAGCTGGACAAAAACTAATCAGTAATTGGACTTTAATCTATAGTAAATAACacaatgaaatacaaaaaacatttgaatactCGCACATCTTTTCCATTTTAGTTTAATATTGTCTGTTGTAAACAGCGCCCActcatctgataaaatattaaCAGACTTATTAGATTTCTCTATGAGAGTTATTGTTCAGATGAATATAACTCTCATGTGTGTACTCTAAATGTGAAGTTCCCTCAAGCGgacgttagcttagcttaaagactggaaacgggcaGAAACAgctagtttagcttagcataaagactggaaacagctagcgtGACTCCGTCCAAAGGTAAACCTACCCGACATGAGTGATGATGACCGTTTTATCCAAAATGtccagagagaaaataaaagtgtatatTTTGTCGGACCTTTCTGTGATACAAGAGGAGAATACAAATTTAATAACACTTCataataactattaataattcaTATACAGTAGTACACTGGTTTAATGAACTGGTtactttttattgttaaaaacgTTGTGTTCTTTATTCATCTGATTTCCTTTACTATATAATCAACTAagcattcaaaaataaaagacatatcACAAAAACTGGTCCTGTTGTTTTCTAAAAGGGACAAATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63642 lncRNA downstream 127684 6826253 ~ 6827520 (-) True G47641
TU63455 lncRNA downstream 383080 6571892 ~ 6572124 (-) True G47498
TU63441 lncRNA downstream 581661 6366360 ~ 6373543 (-) True G47485
TU63409 lncRNA downstream 718366 6232908 ~ 6236838 (-) True G47459
TU63397 lncRNA downstream 813315 6118484 ~ 6141889 (-) True G47447
TU63685 lncRNA upstream 13373 7049748 ~ 7270452 (-) False LOC120558809
TU63687 lncRNA upstream 14939 7051314 ~ 7051795 (-) True G47677
TU63704 lncRNA upstream 143733 7180108 ~ 7266048 (-) True G47693
XR_005639199.1 lncRNA upstream 179088 7215463 ~ 7218392 (-) True LOC120558811
XR_005639197.1 lncRNA upstream 233553 7269928 ~ 7270397 (-) False LOC120558809
XM_039799656.1 mRNA downstream 106835 6846035 ~ 6848369 (-) True LOC120558601
XM_039799655.1 mRNA downstream 117154 6827685 ~ 6838050 (-) True LOC120558600
XM_039800050.1 mRNA downstream 131668 6816707 ~ 6823536 (-) True LOC120558793
XM_039800051.1 mRNA downstream 131670 6816707 ~ 6823534 (-) False LOC120558793
XM_039800052.1 mRNA downstream 131674 6816707 ~ 6823530 (-) False LOC120558793
XM_039799688.1 mRNA upstream 260191 7296566 ~ 7299426 (-) True LOC120558623
XM_039800065.1 mRNA upstream 283650 7320025 ~ 7359408 (-) True LOC120558800
XM_039800064.1 mRNA upstream 283650 7320025 ~ 7325464 (-) False LOC120558800
XM_039799689.1 mRNA upstream 339351 7375726 ~ 7407678 (-) True LOC120558624
XM_039800067.1 mRNA upstream 402808 7439183 ~ 7447849 (-) True LOC120558801
TU63635 other downstream 149498 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 233475 6696445 ~ 6721729 (-) True G47624
TU63181 other downstream 2221919 4732796 ~ 4733285 (-) True G47254
TU63179 other downstream 2224063 4730501 ~ 4731141 (-) True G47252
TU62956 other downstream 2998822 3955604 ~ 3956382 (-) True G47059
TU63848 other upstream 449052 7485427 ~ 7487060 (-) False G47814
TU63850 other upstream 449052 7485427 ~ 7498802 (-) True G47814
TU64005 other upstream 735561 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 778776 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 1069686 8106061 ~ 8106195 (-) True LOC120559931

Expression Profile