RNA id: TU63874


Basic Information

Item Value
RNA id TU63874
length 2135
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G47837
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7607891 ~ 7623479 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttttttttttttatttttaatgttattacatCTTCTAATCTAATCCTTCTACCATTGCTTCAGTTAGTACTGAAATACGCTTAGCCAACCTAGAGATTTGAACTGTAATGATTGCGATTTTCCTTACTTGTATTTTATATGGCATCTTTAGACCACCGTTTATTATGTACGTAAGTAAATAttgcccccctttttttttttctcttctcgaAAATTGTCGTCTGCACTATGTTATGATTCTCATAATATCCCTGATAACAATTTCGTGGTCGACTCATTATTAATCTAAGCTGAACTTGCGCCCTTGCACAAAGCAGCGAAACATCTCTTGTAAACACCTGAGAACCAAAGTACACCTAGCATCCCCATATATCCCCTATAaagcccccctcccccacccccaatAGTTCCCCGACATCGACGGTTTGCCCCCCGAGTAACAAGTTTTCTGATGAgtatgattatatatatataatgacatTACAGCACGTGTGATTTATCTGACAAAGTCTGTGAGGTAACGGTGTTTTTATTAACACCGGTTGATGTAGAgacgcagacagacagggagaggaaggaaggaagtgtgttttgtgtggacAGTGAGCGAGCGAGTAGGCAGGTTTTGTTTAGGCATTGTGGGTGAATCCAACGCTCCCGTCGCTCGCTCGCGTTACTACTTCTGTGACTGAATTTGGGCCGTGTGAGCCACTGCACACGCTCAGATCAACGCTAATACGCAGGAAGGAACGAAACCTAGCGAATATGCTTTCAGTCATgctggggttttttttttggcgcCCTCTTTTTGCATTTTCCTTACACGTTATCGTTGCGCTCTCTCAAAACTTGCCTTTTAACTTCCCAGACTCAGACTGATGGAGCAACTTTTCGCTGTACTGAGTCTCTCCATGTGTGGGCATGGAGGCTGCTAAAAGTGGCTGAATTCTCCTCAAAACACAAATCTGAGATTAGTTTGCCTTCCAATGGATGTCGTAGAGCTTGCAAGAAATGATTCACCAGTATGGAGatgaaatttgaaaaaaagacttgAGAGCTCAAACAATTTGTCGATAAATAGATTAGAAATGAATTGATAAATCTGCAACCACAGGGCTCTTTTTAGGGGGAAATGGCAAACATACTCCACTTCCAGCTTTTCAGTTAGTTGCATTTCatttagagctgcaacgatttgTCAAATAGTCGATCGACGGAAAAGATCCCACCaacaatttgaagaaaaaaagttatCCAAAAATGTTGCTGCCTCCACACGCGTCAACAGATCCATTTCTAAATGGTCTCCAGTTTCTTGTCTCGTCTAAATCTCAGCTGAAGTGTTGCGAGGAAAATTCACCTTCCCTGTGACTGACTGAGTGATCAGAGTTGTCCAGCGGATAAAAGCTTCCTGCCTCACTGCCTACGCAAACGGGAGCGCCACTGAAGAGCTCGACAATGTTAAAAGAGAACCAAAAGTCCCAGAATAGAAATGTACTATATAGTATTGTAGAAGTCAAACAGTATTATTGTCTGTCATACAGAATGTGGAAAGGAGTCATCAGTCGCATGGTACCTGTTCTGATCGATTTGCAGGATTCTCACAGCATTTTGTCCGGTTTGAATAAAGGTCCCtattttgtctgtctctctctacactgccactccccccccccaaacagcCCCCCTTACGCTCCAGTATaatccccccacccctcccctcccctccgaTGGCTGGGTCCCAGTAACAGGTTCAAGTTGATCATTTTGAGCTATTTCTTGTCCTGTTGATCGAATTGTGCCGTCAGCCACAAGTGTACCGATGCATGTACTTCAGTACCCAGGGCCACCCTAAACTACCTGTGCAGcaaaaaaaagggttaaaatGTATCAATAATATTGTTATAGAAATATTATCATTATTGCTGTTATAATTATGGTTGGTATAATTTGTCATCATTGTTAGCATTATGGAAGCACCGGACTGTTTGTGGAAAGACGAGAAAaatgaaagcttttttttttattgtctggCTGTTGGTGGTCTGATCTcacagagggaggggaggaatgGTTCAGAAAGAGACAGATGGCAGTCATGTTTGTACTGGTTGGGAAATGACTTACAGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63883 lncRNA downstream 2588 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 99466 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 99487 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 106971 7500657 ~ 7500920 (-) True G47817
TU63774 lncRNA downstream 165698 7441921 ~ 7442193 (-) True G47759
TU64039 lncRNA upstream 309470 7932949 ~ 7955256 (-) True G47949
TU64046 lncRNA upstream 368390 7991869 ~ 7994732 (-) True G47956
TU64064 lncRNA upstream 423820 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA upstream 424343 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA upstream 424343 8047822 ~ 8050421 (-) False G47972
XM_039799769.1 mRNA downstream 8117 7590901 ~ 7599774 (-) True hsd17b10
XM_039800067.1 mRNA downstream 160042 7439183 ~ 7447849 (-) True LOC120558801
XM_039799689.1 mRNA downstream 200213 7375726 ~ 7407678 (-) True LOC120558624
XM_039800065.1 mRNA downstream 248483 7320025 ~ 7359408 (-) True LOC120558800
XM_039799778.1 mRNA upstream 50983 7674462 ~ 7707260 (-) True LOC120558669
XM_039800375.1 mRNA upstream 154308 7777787 ~ 7844399 (-) False spryd3
XM_039800373.1 mRNA upstream 154308 7777787 ~ 7842800 (-) True spryd3
XM_039800374.1 mRNA upstream 154308 7777787 ~ 7842794 (-) False spryd3
XM_039800376.1 mRNA upstream 157817 7781296 ~ 7842800 (-) False spryd3
TU63850 other downstream 109089 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 120831 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 571516 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 802185 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 886162 6696445 ~ 6721729 (-) True G47624
TU64005 other upstream 148457 7771936 ~ 8187551 (-) True G47934
TU64023 other upstream 191672 7815151 ~ 7886850 (-) True G47937
XR_005639386.1 other upstream 482582 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 2067051 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 2084852 9708331 ~ 9724134 (-) False olfml3a

Expression Profile