RNA id: TU64005


Basic Information

Item Value
RNA id TU64005
length 1418
RNA type TUCP
GC content 0.52
exon number 2
gene id G47934
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7771936 ~ 8187551 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGGTCggtaaaactttatttttttcacattgaTAAAAAGGCACCGATCAGAGATCAATAAAGGGGAATGTATGCCTATTTAATACTCCTCTCCTTCATCATCCTCATCTCCCACACTATCAGCTCCAACCTCCTCATAATCCTTCTCCAGAGCTGCCATGTCCTCTCTGGCCTCAGAGAactctccctcctccatcccctCACCCACATACCAGTGAACAAAGGCGCGCTTAGCGTACATCAGATCAAACTTGTGGTCACCTTCCAATGCGTTAACTCCAACCATAAACATGCTGATGTCCCCTCTGGTCCTACAGGAGTTTTATTCTGAACAACCAAACTGATAATTAATAAACAGTTTTGGAACATATTTAAGACGGAATGGAATCAATCGTTTCCTGTTTGACTAGCACCTTTTAATATTCCTCTCCTTcatcctctccctccccctcaaTAGAGTCGACTCCCACCTCCTCATAATCCTTCTCCAGAGCGGCCATGTCCTCTCTGGCCTCAGAGAactctccctcctccatcccctCACCCACATACCAGTGAACAAAGGCGCGCTTAGCGTACATCAGATCAAACTTGTGGTCAAGCCGAGCCCAGGCCTCTGCAATAGCAGTGGTGTTGCTCAGCATGCACACAGCCCTCTGGACCTTGGCCAGGTCTCCACCAGGAACTACAGTGGGCGGCTGGTAGTTGATGCCCACCTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGAGCGCTTGGCTTTAATGGTGGAAATGGCAGCATTTACATCTTTGGGCACCACATCGCCACGATACAAAAGGCAGCAGGCCATGTATTTGCCGTGGCGAGGGTCACATTTCACAAACTGGTTGGCTGGTTCAAAGCAGGCGTTGGTGATTTGTGCCACCGTTATTTGCTCATGGAAAGCCTTTTCAGCAGAGACTACAGGGGCATAGGTGGCCAGGGGGAAGTGAATTCGGGGATATGGCACCAAGTTGGTCTGGAACTCTGCCAGATCAACATTGAGGGCACCGTCGAAACGAAGGGAGGCAGTGACGGAGGACACAATCTGACTGATCAACCTGTTCAGGTTGGTGTAAGAAGGACGCTCGATATCGAGGTTCCTACGGCAGATATCGTAGATGGCCTCGTTGTCCACCATGAAAGAACAGTCAGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTAGGGCTCCACCACAGCGGTGGACACCTGGGGAGCTGGGTAGACAGAAAACTCCAGCTTGGACTTCTTGCCGTAGTCGACAGACAGACGCTCCATCAGCAGGGAGGTGAAACCAGAGCCGGTGCCACCCCCGAAGCTGCGGAAAACCAGGAAGCCCTGAAGGCCGGTGCACTGGTCAGCCtgaggacagagagggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63874 lncRNA downstream 148457 7607891 ~ 7623479 (-) True G47837
TU63883 lncRNA downstream 166633 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 263511 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 263532 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 271016 7500657 ~ 7500920 (-) True G47817
XR_005639295.1 lncRNA upstream 94396 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA upstream 94396 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA upstream 94396 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA upstream 94396 8281947 ~ 8296462 (-) False LOC120559498
XR_005639294.1 lncRNA upstream 94396 8281947 ~ 8296462 (-) False LOC120559498
XM_039799778.1 mRNA downstream 64676 7674462 ~ 7707260 (-) True LOC120558669
XM_039799771.1 mRNA downstream 139391 7612487 ~ 7632545 (-) False fam120c
XM_039799770.1 mRNA downstream 139391 7612487 ~ 7632545 (-) True fam120c
XM_039799769.1 mRNA downstream 172162 7590901 ~ 7599774 (-) True hsd17b10
XM_039800067.1 mRNA downstream 324087 7439183 ~ 7447849 (-) True LOC120558801
XM_039800409.1 mRNA upstream 517 8188068 ~ 8217881 (-) True jph2
XM_039800967.1 mRNA upstream 64627 8252178 ~ 8255966 (-) True fitm2
XM_039801740.1 mRNA upstream 194228 8381779 ~ 8409734 (-) True ada
XM_039800902.1 mRNA upstream 385128 8572679 ~ 8577776 (-) True LOC120559283
XM_039800908.1 mRNA upstream 445504 8633055 ~ 8643551 (-) True gdi1
TU63850 other downstream 273134 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 284876 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 735561 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 966230 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 1050207 6696445 ~ 6721729 (-) True G47624
TU64676 other upstream 1502979 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1520780 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1837443 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2455168 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3701390 11888941 ~ 11891046 (-) False srxn1

Expression Profile