RNA id: TU64023


Basic Information

Item Value
RNA id TU64023
length 3069
RNA type TUCP
GC content 0.46
exon number 3
gene id G47937
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7815151 ~ 7886850 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcccctttcatgtcttcagctgtcctcaaataaaggcctaaaaatgccaacaaaaaaaatcttaaaacaaAGTACAAACAAGTTCTGCACCTTAAATTCATCCAAATACTGTGTGATGGCGTTTTATTGCATTTCAACCATGTTACAGCACATGTAGACTACAGCAGCATCTAGGAACAAATAGCATTTAGTAATGTGAATTAGGATTTATCTGTTAGATTTGTGATgaaatcaaatattttttaatatttatttattttttacattttgcaagacTCTTATGTGGCTACGAGGCTTGCTCTTATGCGGCACTGGACGGACCGcacatatgtttttttatttacacacaTTCCTGGTGTGGCACTATTCTTCTTCTGTGccatgagatttttttttttttttttttttttttttaaagaggtttACCATGACTTCCTGTGGGAGCGCATCAAACATTTCCTGCCTTTCTTCCGTTGATGATCAGATACACGATATAAAAACGGGAAGTTGATTATGAGAGGAAGGTGTTTGTGAGCCCCTCTGTTACGTAACAAACAGCACTGTGAGTCTGCGACCAGAGTGGAGATGTTGTGCAATCTAAGCCTCCGGTATTCTGAAGCACCAAGACTGGATTCAGTTCTGTCTCGCTCCTGTCGCTCTCTCTTTTCTTATCtcagtttcttttttctttttttttatgatccaACATCAGACTGGCTGGTGCTGGCGTTACTTAACTTGCGTTGCTTCCCCGCGTCTCCCCCGCCTCCGTTGGGAGCGCGGGGCTGGGTCCCCGCTCCCGCCTGCTCCGCGGTCCCCTCTCTGGGGATGTACGTCACCACGGTGTTGATCAGGTTGTTGCGGAAGCTCTTGCTGAGGAAGTTGTAGAGGATGGGGTTGGCCACGCAGTGGAACAGGGACAGGCTCTGCACCACGCTGATGGCGAAGTAGAGGGCTTCCACCGTGTCGCAGCTGAGGAGGAACGGGTTCAGGTCGTCTATGATCATCAGCAACATGACCAGGTGGTAGGGCAGCCAGCACGCCACGAACACCAGCGAGTACACGTGCACCAGCCACACGTCCCGCCTGCCCCGCACGTCCGGTGCCGTCCGAACCGCCCGAGCGATCAGCACGTTGCAGGTGACGATGACGGCGGCCGGGCCCGCGAACTGGAAGATCAGGCAAAGGAACGTCACCGAGACGAACCATTCGGTGTAGTTGTGCGCGGGCAGCATGTAGCAGCCCGGCTCGTCCCACTCTAGGAGATCCACGTGGACGTTCTCCATCAGAGCCAGGAGCAAGGAGAGCGCCCACAGGCCTCCGCAGAGCACCCAGCGGCGCTGGCCCAGCACGGGGAAGAAGGCGGGAAACGAGGGCCGGGTCAGGGACAGATAGCGCTCCAGGGTCATGAAGGCCAGGAAGAAGGAGCTGCTGTAGAAGTTGACCACGTAGACCAGGTTGGTGACCTTGCAGAGGAAGCGGCCCCACAGCCACACCTTGTCCATGGTCACCTCCATCATGAAGAAGGGCAGGATCACGATCACCATGAGGTCCGACAGGCTGACGTTGATGATGCAGAAGAGAACCCCGTTGGCCGAGTGGCGTCGGCGCCAGTTGACCCAGACGACCAGCGCGTTCTCCAGCAGGCCCACGACGAAGATGAAGAGGTAAATGAGGAAGAGGGCCATGCGCCGGTAGTCGGTGAAAGAGTCCAGCTCCAGGGTGCACTCGTAGACGAACCACGGGGTGCCGTTGAAGTAGTCCAGCGAGTGGTTGTGCTCGTGGGCGCTCATGGTCTGCAGTGAAAAGCAGAGTGAAAGGGTTTCATGATTTACTTTGGGGTTAATCTGATTATGTTTTCAGgcgttacacaacacacacgcacaggaggaggaggaggaggaggagggtggcaGGGGCAAAATGTTTCTCCAAAGATTTTCAGAGGTGGGTACTAAAACCACAACAGATTGTTAGAAAGCCATTTCCCAACCACCAACGCCTGCAGTGCAGCTCAGATGGCAtaaaggaccccttagctgaaagagagacagaatagggaccccctactactgtacatatattgtataaaattgagttgcatgttaaactgggccggatggatgaaaatgaatagatgtatattatttatacatcgtgttttaatgttaaatgtatatgtggaaggcacagtgaattcTTAAGCCTAACTGTATGGCTACCTATATtaagcttatcttcaatgtgtaaatAGGCCAAATTATCTTTCCAAATAATAGGTTGCATTcgtattattgtatattttcagacatatttgaaTTTCGAAAAAAGaaactttcaaaaacattttagacATAATATGGCGCCTGCActtactctgaggaccccctaggggtcacggaccccctgttgaatatcTCTGGTATAAAGTTCTCACTTTGAGGGGCTGAGAGTAGCTGAGTTTGTAATTACAGTAATACTTGCTGATTTATATGAATATTTATAGAGTGCTCCACCGATTAAGCCTTCCTGTTAGAGATGACCCGATACCTTTTCTTTGcctcccgataccgattctgatacctgaacttgcgtatcggccgataccgagtaccgatccgataccagtgcgtcatatattttattatgatttaacaactgtatactactatccctgtatggatgggatatgatttctatcttagttgtctgtctggcttagattaaactcttatgtgtatgaaacatgaacaaatacaaacaatgaacgccacagaactttcttttattctccagtttgacagtcagttataacggaaaaatgtcataaataaactactttaacgtagatttctcttcagggctttattacgtggtatcagatcggtgcataaactccagtacttcctgataaagataccagcgttttaggcagtatcagaGCCGATACCGAAACTGGTATCgttatcggaccatctctacttCCTATAACATTGTTTGACTCACatggacagtgtgtgtatatatatatatatatatatatatatatatataattttttttatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63874 lncRNA downstream 191672 7607891 ~ 7623479 (-) True G47837
TU63883 lncRNA downstream 209848 7603967 ~ 7605303 (-) True G47846
TU63857 lncRNA downstream 306726 7507321 ~ 7508425 (-) False LOC120558662
XR_005639162.1 lncRNA downstream 306747 7507296 ~ 7508404 (-) True LOC120558662
TU63853 lncRNA downstream 314231 7500657 ~ 7500920 (-) True G47817
TU64039 lncRNA upstream 46099 7932949 ~ 7955256 (-) True G47949
TU64046 lncRNA upstream 105019 7991869 ~ 7994732 (-) True G47956
TU64064 lncRNA upstream 160449 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA upstream 160972 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA upstream 160972 8047822 ~ 8050421 (-) False G47972
XM_039799778.1 mRNA downstream 107891 7674462 ~ 7707260 (-) True LOC120558669
XM_039799771.1 mRNA downstream 182606 7612487 ~ 7632545 (-) False fam120c
XM_039799770.1 mRNA downstream 182606 7612487 ~ 7632545 (-) True fam120c
XM_039799769.1 mRNA downstream 215377 7590901 ~ 7599774 (-) True hsd17b10
XM_039800067.1 mRNA downstream 367302 7439183 ~ 7447849 (-) True LOC120558801
XM_039800389.1 mRNA upstream 2977 7889827 ~ 7898293 (-) True LOC120558974
XM_039800388.1 mRNA upstream 13923 7900773 ~ 7943081 (-) False agap2
XM_039800386.1 mRNA upstream 13923 7900773 ~ 7943081 (-) False agap2
XM_039800385.1 mRNA upstream 13923 7900773 ~ 7937187 (-) False agap2
XM_039800384.1 mRNA upstream 13923 7900773 ~ 7937187 (-) False agap2
TU63850 other downstream 316349 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 328091 7485427 ~ 7487060 (-) False G47814
TU63670 other downstream 778776 6955204 ~ 7036375 (-) True LOC120558602
TU63635 other downstream 1009445 6804141 ~ 6805706 (-) True G47638
TU63619 other downstream 1093422 6696445 ~ 6721729 (-) True G47624
XR_005639386.1 other upstream 219211 8106061 ~ 8106195 (-) True LOC120559931
TU64676 other upstream 1803680 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1821481 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 2138144 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2755869 10642719 ~ 10654818 (-) True G48697

Expression Profile