RNA id: TU64097


Basic Information

Item Value
RNA id TU64097
length 5924
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120559498
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8281947 ~ 8296468 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGCTGAGACCTGATGTAACACTTGTGTGATTCTCCCCGTTGAAACTTCAAACTCCAGTTTGTGAACAAAGTCCTATATCTTCTGAATAGGAATCTCCGACCACTGGCCAAACTCCATTCGCAACCACTGCCTATTTGTACCTTCTCCTCAATGATTACATTTCATTTCCCCAAGTCCGATCTCAAAGGCAGACCGCAGGGAAGCAACATTAAGTaagaaaaattaaacaaaaacaaacaaaaaaaaccaggAACCAGCAGCTTGGGAGGAAAAGAGGATCATGGTGGCCCCGGTGGAGGAGTTGTTTAATAAGATATGGAATATGCGCTGTCTGGGGACTTATTTGGTTTCTTTCTGAGAAAGCTGCAGCACATGGGGaaatgtgagtgtttgtgcaGCACCATCCAGGAGCGTGTTGATGTTGATAAAGAGTAAAACAGAAGGAGACAATGTGCTGGCTGCAGCAGGTTTGAGGCTGccgctctgctctgctctgctgcagTAGATGGAGGAGATAGCGTCCCATCCTGGCCATACATCCCCCTGAAGGCCGAGCCCTGACAGTGAGCCGGCCAGCTGAGCGAAGGCCCATGAGCCTCAGCGGCTCTCTCAGGCCCGGCCAGGCTGAGGCAGGCTGGGAGGAGAAGCAGGGCCACTGTTACCGGATAGTGCTGTTTGCCGGGGCCACCGGGCTGGCTTGTAAGGGCCCACAGCACCCAGGGATAATCCCCCTAATGCCTGTCACAATGAGATTTGATTGGAGACTTGAACACCCGGATTAAAAGTGATATGAAGTTCATGTTGCTGTTactgtctgatcacattcacGCTGTCACAAGCTGGCAAAAGCAGCTCGCCATTGACACAGTCAGAGACTTCATTACTGCAGTAAGTCGAAATGAAGCGAGCTTACATTCAAAATCAGTTAATCCAGATGACAAACATCATGTTAAGGtcttaaacatgttttaaagtgGGTAAACATGTGTAAAAACACTCCATTTAGATCAGAAAGGCACATGGAAATTAAAAAAGTTACATAATTATTAGTGCTGTCACTTAAacgcgttaacgcaaacccattttaacggcgtaatttttttttatcgcgagattaacgttctttttggcctagcgaactttgtagtttttttcacatgctgttgcaacaactagtaacgttagaacaactacaacaccacaccggatctagctagaccggaaactaaacaacaggcacgccgcgcacacttgtttgggcgtttgcgagccggccaaagagtagtaggctaacgttacgttttgagtggatggcgagcgcgagacgccaaaatggatgccaataagattctgaatggaaagtttacttttaaaaagttgccaaatggttccattgacgagACCAAAgcgatctgtgtgttttgtcgttgagAATGGAGCTATCGtagcagcacgtccagtctgaaatgccacctgatggccaagcacacagctgatgccaattctccgccccctcgtcaaagccaggcgacaaaagcgcaaagcaagccgatccacttttccatgttgataagagcattaaaataagaaaaaataatgggacaaaaagaaatcaagggacgtttagaatagataaaaatgtgcgagttaactatgacattaatgcgattaatcgcgattaaatattttaatcgtttgacagcactaataattATACGCCTGCATGGGTATTTTAATAAAGTAGCCAATTCCAGGACCCTGTGGCGGGAAGGAAAAATTGTAGCCGACCCCTCCCACCCtggacacaaactctttgacCCCCCCTCCAATTTACATGGACTCTTATCCCCCCCAATACACTGTAGGCACTACACATTTCATTAATGTCATCACATCTGTCTATACGAGTTACATCATTGCACATCTTTTTGGACTATTTTCTCGGTGCATTGCATATTCTTTTTAATCTTAAAAGGTCcggtgtgtaacgtgtttagttgtttatAATGAAAATCGGTGTTGCCCGTTCCCAAACTTCTAAAACTtcgtcctttttcatgaatatttaccaccaccatcaattccaagtattccttttggcttgaaatgttacatttgtgttagcatgaactggggtagacgctccatattcacaCGCCATCTTGAATATATTTCTGCACATTTTCTACCAAGCTATTTcatattaaaaagttacattgtacatatttttttttaaatattttattgtaattttctACATTCGTGTTTCTTGTTATGCACCATTACACCaaagcaaattccttgtataTAAAAAACCTACTCGGCAACAAACcggattctgattctgattcactTTGCTTGTCAAGTGTAGTGGGTTGTCAACAttagaaaacaaagcaagagtTGCAAACTAAGACATTTGtgaaaattcattaaaaatctaaaacaaaaaaaatcttggtAAACAGCAGTTGACTAAACACTCTCTCCACATGGGCGAGAAGTGCTTTAAGTGCTTTGAAAAATGAATTTGAAGATTTCCATAACAATTGGGCAACTCCATCTGCTGAAGAAGAGTTACAGCACAGTTACTAATGGGCCATTTAGTGAGACTGATTTGTCAACAGTTTATAAACTAGTTAAAACCCATCTCCAACATAGCAATCTAAGACatcaaaatgctgcttacacatcAGTAATTATAATACAGTAATAGAACACTGACAGGGGCCAGTTTGCCACccaatgagtacttttacttctgcTTCCTTAACTACATGTTGCTGATAATGCTTCACTTTTGCCGATTCCGTAAAATTATGAAGGACTATTGCTTTTGCTatgtttactgaagtaaaagatctcaatacttcttccaccactgccttcCGTTCAAATTGATTTCAGTCAATCAATGCAAACATCAAATTTGactcattttcaaaaagtttctatatcagaaatttgggtttctttcaaccaaaattgtcaaaagaaataacgtcacaagttttattcaatttcatagcatttacatttacacgggaagacaacacaagggttaaacacatTTCAGgtactatgtatatatatacataaatatataggtTTTCTCATGATAAATCATCCTGACCCACACAGCAGCATGCAGCGTGTATGCCACAAACATTCGTAATAAGTTGTTGACTGTGTTGACATTTAGATGTGGTTTTTGTGAGTCATTTGCACCGTTTTAACTTAGTCTCTGTCGCTCCGATGGTGTGTGTTAAGGAGCCTCTCCGTGCCCCTCTGTCAAGTCATTCAGCTTTGTGGGCAAACAGATAATCCGCCGAGGAGCTGTTGAACGGCTGCTGTCATGTTTGCATTCACCAAGAGATTCTGCAAACAAGCAGAGCTCGGGAGTTTGTCCAGGTTGTGACCGTTGGGCAATTAATCCCATATGTCTGACACAAGTTGTGTGCGTTGTAGGAAACCCTGCTAAAAATGACAGAAGACACTCGGCACCCTCTCTTTCCTGAATATGAACTTCTGCcatcgggggggggggaagattCCGTGTGCCGAGATGTAAAACAATCTGACTTACTGTAAGTTATCGTTCATCCAAACCTCTATCAAGCTGCACAACAAGAGAAATGTGCAATAAATACACCAGCACTTTTTGCACACGGTCACTTTTTAAGATGTCGTATTGGCATACAGTCATGCATCATTCATGTCCTGAGATGCTTTGTTGAtcttatgttgtttttatgtcGATTTTATGTCGATTTTACAACGGTTTCTCGGTTacgtgtttgtgttgtgaagcaacagtTTGTAGCACTATGCCCAACACAAATGTCCCCCTCTGGGACAATAAAGTctgttctattctattctaagaGGACGGTCTGTCAACTTGTCTCTGTAGCCGAGTCTCAAAAGGCTGTTTTGGTAGAGATAACTACCAGACGTCACTCAAAATCTTTGACACGCTTGGCTTTACTCATGGGCATGTTGAATACGCAGTGCTTGCTAGAGTCATAATGTCAGCACAGGTTGGAAGAAAACAGTGATTTGCAGTTTGTTTGGACAAAGAAGCATAGTATAACCCGATCTAGGCCAAAAAGAGGCTTAGTGTAGGCAGCAGCCAAAGAATGCATTCGTAACTTAAATGCCCTTATTTTGGAAGATTTGTATACTGGATAAACAAACCCTTTcagaaaatgttgcttttgttGCTATTTAAAGCAGTTTGAGAGACAATTCATGGATGACAGAGGTGGCTAATCAGAGCTTAATGCAATGGTCACTGGCTTTAAAAATCAGGGGCATATGATACATACACAAAATGCAGTCAATTCTCTAGTTTGGACTCCTTTTTTTATAGCATGTAGTTTAAAGGATAAGGCAAAAACAACATGTTAGTCCATCTATAAAAACTTCCTGGCTTCCCTACTCTGTCTGTAGCCCATTTGTATCTACTAAAGACATAGCCTTAAAAACAGGTCATGAGTGTCTGCTTTCATGTTAGTAAAAGGCTCAGTTATTTCCAAAAACAcgtgggcactgtagtttatagCAAAAGTTACTCAAACAGAGTGTTTGTTGGGAACTATTTTCAGCGACGGATTAGTACACAGTTaatgctctagtgagtatttgggGCAGCAGGACGAtgtatgtgggattgagtcagaatgaagtacagtgtgtgttcatgttgatGAAGGAACAGTATGgctttttaatagttttttagaaaacaatggctgagaaaaataaagaaccTCACCAGACATGTCCACTAAAGACGAGATCAGCCCTGAACCGTACAGGCATTAACGGTCTCTTGGCCTCTTCACACGATCGTGTTAAACGATGCCTCAGATTGTAATATATTTGATGAAATGTGCAATAAATACTCAGTAGCTGCCATGATTTACTAGTGAGGATTACCACCAACATAATCACATCTTTGTGTGGTTGTTCAGATCTTGTTGATAGAGacattgtcacttttttccccccattgtattattatcattatgttGAATGTGTGAATGTAATTACTGGCATCAGTGGTCGTTCAATATGGAAGATTTAAAATGCCTAATAAACACAAATCAAAATACAATACACGTTATGTGCATGTCCTTTTTATGCGGCGTATGCATTTACTGTGTCATAAttgaatgatttttttaattacaattaTTTAGACTTTTGTGAATGAACTGAACTCTGACCTGAACTTTTTTTAAACGGCTAGTCAACGGGGAGATTTTGTGTCTAGTCCAACTTCGACGTGCATATTTGCGCCTTTGGATATTTGACCAACAGCAAAGCGGACGAGAACGGAGAGAAGAAGAGCTTTTTAGTCGTTTTTATTGAACCTCCTCTGTTGGAGTAGCCTACAATCTGCTCCACAACAGAGGAATTGTTTGCAGACAGATGAtgcaaatacatattttgatgTGTACATAATGATGAATACATCTGAGCTAGCAAGCTCGTTAGCCTGGAGAGCTATCATCAGAGGCACTGTACCTGGGTCCagcacttagcgccgcccaagacgattgggattggtttaaagaaatgcttaATAACCCAGAGCAGGTTTCTCTCCGATCCcacaatgctgtgtggactagccagaccctcctccgcagagctgtggaggaaggtctggcaatgcgagacttaaGTGCCGCCCAAGACTTACAGTAGATCACCAACTGACAATGTGAGCAGTCACAATGTCACAAAACTAGAACCAAATGTTTTTgcgctacatttatttatattcttaaacattttttaatatattagGTCTGAGGTGACGTTTGGATGAACAAGAATACAGTGTCACAAACTGGCTAAAGGTGTAAAAAAAGCACCTGAGTCCCTTTCTGTTTCCGGGCCTTTAGCAGGAGTG

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko00630 Glyoxylate and dicarboxylate metabolism
ko00140 Steroid hormone biosynthesis
ko00340 Histidine metabolism
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64020 lncRNA downstream 106162 8178655 ~ 8179100 (-) True G47935
TU64064 lncRNA downstream 211027 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA downstream 234841 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA downstream 234841 8047822 ~ 8050421 (-) False G47972
TU64046 lncRNA downstream 290530 7991869 ~ 7994732 (-) True G47956
TU64117 lncRNA upstream 33649 8330117 ~ 8333521 (-) True G48010
TU64146 lncRNA upstream 84649 8381117 ~ 8382101 (-) False ada
TU64266 lncRNA upstream 315230 8611698 ~ 8654319 (-) False G48128
TU64267 lncRNA upstream 315230 8611698 ~ 8654319 (-) True G48128
TU64292 lncRNA upstream 407923 8704391 ~ 8704711 (-) False LOC120559289
XM_039800967.1 mRNA downstream 29296 8252178 ~ 8255966 (-) True fitm2
XM_039800409.1 mRNA downstream 67381 8188068 ~ 8217881 (-) True jph2
XM_039800413.1 mRNA downstream 110270 8172190 ~ 8174992 (-) True LOC120558991
XM_039800410.1 mRNA downstream 115536 8164469 ~ 8169726 (-) False LOC120558989
XM_039801740.1 mRNA upstream 85311 8381779 ~ 8409734 (-) True ada
XM_039800902.1 mRNA upstream 276211 8572679 ~ 8577776 (-) True LOC120559283
XM_039800908.1 mRNA upstream 336587 8633055 ~ 8643551 (-) True gdi1
XM_039800914.1 mRNA upstream 366008 8662476 ~ 8674082 (-) False taf8
XM_039800915.1 mRNA upstream 366008 8662476 ~ 8674082 (-) True taf8
TU64005 other downstream 97711 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 179067 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 398412 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 786460 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 798202 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 1394062 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1411863 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1728526 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2346251 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3592473 11888941 ~ 11891046 (-) False srxn1

Expression Profile