RNA id: XR_005639295.1


Basic Information

Item Value
RNA id XR_005639295.1
length 3449
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC120559498
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8281947 ~ 8296468 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACCTGATGTAACACTTGTGTGATTCTCCCCGTTGAAACTTCAAACTCCAGTTTGTGAACAAAGTCCTATATCTTCTGAATAGGAATCTCCGACCACTGGCCAAACTCCATTCGCAACCACTGCCTATTTGTACCTTCTCCTCAATGATTACATTTCATTTCCCCAAGTCCGATCTCAAAGGCAGACCGCAGGGAAGCAACATTAAGTaagaaaaattaaacaaaaacaaacaaaaaaaaccaggAACCAGCAGCTTGGGAGGAAAAGAGGATCATGGTGGCCCCGGTGGAGGAGTTGTTTAATAAGATATGGAATATGCGCTGTCTGGGGACTTATTTGGTTTCTTTCTGAGAAAGCTGCAGCACATGGGGaaatgtgagtgtttgtgcaGCACCATCCAGGAGCGTGTTGATGTTGATAAAGAGTAAAACAGAAGGAGACAATGTGCTGGCTGCAGCAGGTTTGAGGCTGccgctctgctctgctctgctgcagTAGATGGAGGAGATAGCGTCCCATCCTGGCCATACATCCCCCTGAAGGCCGAGCCCTGACAGTGAGCCGGCCAGCTGAGCGAAGGCCCATGAGCCTCAGCGGCTCTCTCAGGCCCGGCCAGGCTGAGGCAGGCTGGGAGGAGAAGCAGGGCCACTGTTACCGGATAGTGCTGTTTGCCGGGGCCACCGGGCTGGCTTGTAAGGGCCCACAGCACCCAGGGATAATCCCCCTAATGCCTGTCACAATGAGATTTGATTGGAGACTTGAACACCCGGATTAAAAGTGGCAAGTAATACCTACCCTCCAAACAGGCTGCTAATTGGGCTAAACACCGGAGAGGCACTTCTAGATCATATTTTTATTACAGTACGGATTCAATTTCACTTCATTAGCTGAGTGATTTGTCCACCAGGACACTATAACACAAGCTTAATACTTTCTATACGGCTGCAGTCATATTCTTAATtctctaactttttttttatgatacgTTATTTCAGATATGAAGTTCATGTTGCTGTTactgtctgatcacattcacGCTGTCACAAGCTGGCAAAAGCAGCTCGCCATTGACACAGTCAGAGACTTCATTACTGCAAGCTTTGCAGAAATTTGCATCTCCTCATCCCACTGTGACATGCAAATCGTTCGGACGGATGACCACAGGAGTGAAAACCAAACTTCCATCAGCTGCTTTGTTTGAAAGCCGCGGAGTGAGAGGCGGCGCTGTGCAGCGAGGCCTTCGCTTTCATTGACATAGTTCAAAACAGACATCACAGGAGGAACGGAACGTACTGCATGCAGTCTGCAGCAGCAACGTGAAGCGAGATGTGAGAGATAGGGATTTCTCCGTTTGTACAGCATCACATACTGCAGCCGTAAATAAAATATAAGCTTCATCAATCGGTTTCGTGTTTCAGGCTTTACAAAGAGAATGTTTTCCGCCCTTCAGGTTCCAGAATAAACACACGTCTGACTTCTTCCAGTAACGCGGCTTTTCAAAACTCCTTCGTGCATCAACACTTTCAAATCATCCTCTTATccagcggtggaatgtaactaagcacatttactcaagtactatacttaagtacaaatgttgagACTTGATGTACTCCCAACTGCTCTGACATCTCAAAAACCTTTGAACCATCGTCAGCATCAAGCCCGGCTGCCACGGCCTTTCTCAACAACCTCCATCTCTCTGACACACCTCCTGGATTACAGCCGTGTGAAAAGGGCAGACACAAATGGCGACGAGATTTCCACCCTCCGAGTCTGCAGTGATCTGCCAGAGCTCTGGAGCCGCTGCACAAAACCAccgaaaaagaaaagaagaagcaagcagctgcccccccccccactgaaACCACCGGGCCGAGGTGCTAAAAACAGTACCAAATAGTGTGTACTCACCAAATGGAAGTTCCATACTTGAAGTGACTTGTGTGTTTACATTGACCATTTCGTCCTCTGCTTCCTCTCCAACATGTGTTTAAAATCCGctttttccctccctccccatGAGGTGTAAAATGTGGAAGTTTGGCGCAGGTTGCTGTAGCGGGAGAAGGCTTTTGTTGGTGCAAGGTAAGGCCGGTGTTGCCGCTGTTATCTTATTGATTTTCCTAATCTGGGCAAATGTGGGTGGGGAGGTTAAACAGTAACCAGGCTCGTATGGACACCTATCTATATAGCAGCTGTAACTAAGGCAACATGATGATAGAAActcaaataaacacaaagttATTATGTGCATTTCCCTCTTTCTCATCACTAAATAGCAGTTTTTCTAGATACAGATTAGGAGTGAATAGGAGCGCCGAATAAGAAACTGAATTGATgctaaaaggagagagagagagagagagaaagctggAGGGTGGAGAGTGACATAAAAGACAGAGGAGTGGAGAATGTACCAAGGGTGGCAGCGGACAAACTGTGGATGATGAGTGGCGTCACCAGTTTTGTTTTGACCGAGGGGAAAATGTTGCCGACGGATATAGAATTGGGCCTGAATCACCTGTGTGGATGACAAAACACCCACCGACATCTCATTTTAAAATCTTATATTTTCAGTCTCCCGGGCTGAAATGGAAATGTCCCTCCGGTTTCACTTCATAATGGCAAATGTTGCACCATGCAGTTCCCATCTGATACAGTTTACAGATTTACTTGTACCAGCGTATAAATATTAGAGTTGGACGTGGGATTGATCACTTTCTGTAACATCACTGGTGTCACAACAGCATGAAAACCAAGGCACTCTTGttgaataaaatattttaaaatcctTTATTGATGCGGCTAATGCATagcaaaaggtaaaaaaatacgCACCAACGCGTTGCGGCACACGGGCCTTCTTCAGGCTGACTAACCAGAAGTATGGAGTTTATGCAATTTACAGTCTCTTGATGAATAATTTGACACCTTTTTGCTTCCATActtagagttagatgagaagatcgatccAATCTCAtattacatatactgtacatatacagcccgcagccagttagcttagcttagcataaaggccggaaacggggagcagctagcctggctctgtccaaaggtaactaccagcacctctaaaagCTCTCTAATCAACACGTTACTGCTCGATAATCTATAAATTGTGGTTTTACGGGGTGTGTTATGTGCCGGACTATTTCTTAGCTGGCAACTGCAATGTGACGACAAgacatcaggagaaaaagaaacacaacacatgtaactttcagcaagaaagcgaataagcgcATTTACCAAAATGTCGAACTTTTTCTTTAGTGTCTGTGGAGGCATTAACTGGTGATGACAGCACAATGCCAGTCGTTTTATAAAGTacggatgtccgtttccttccgatttctttgtgttggcattttaaactgtgGATAaacggtggatttgtgaggactgtggttaaccgctcctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64020 lncRNA downstream 102847 8178655 ~ 8179100 (-) True G47935
TU64064 lncRNA downstream 207712 8047299 ~ 8074235 (-) True G47971
TU64065 lncRNA downstream 231526 8047822 ~ 8050421 (-) True G47972
TU64066 lncRNA downstream 231526 8047822 ~ 8050421 (-) False G47972
TU64046 lncRNA downstream 287215 7991869 ~ 7994732 (-) True G47956
TU64117 lncRNA upstream 33655 8330117 ~ 8333521 (-) True G48010
TU64146 lncRNA upstream 84655 8381117 ~ 8382101 (-) False ada
TU64266 lncRNA upstream 315236 8611698 ~ 8654319 (-) False G48128
TU64267 lncRNA upstream 315236 8611698 ~ 8654319 (-) True G48128
TU64292 lncRNA upstream 407929 8704391 ~ 8704711 (-) False LOC120559289
XM_039800967.1 mRNA downstream 25981 8252178 ~ 8255966 (-) True fitm2
XM_039800409.1 mRNA downstream 64066 8188068 ~ 8217881 (-) True jph2
XM_039800413.1 mRNA downstream 106955 8172190 ~ 8174992 (-) True LOC120558991
XM_039800410.1 mRNA downstream 112221 8164469 ~ 8169726 (-) False LOC120558989
XM_039800411.1 mRNA downstream 112239 8164469 ~ 8169708 (-) True LOC120558989
XM_039801740.1 mRNA upstream 85317 8381779 ~ 8409734 (-) True ada
XM_039800902.1 mRNA upstream 276217 8572679 ~ 8577776 (-) True LOC120559283
XM_039800908.1 mRNA upstream 336593 8633055 ~ 8643551 (-) True gdi1
XM_039800914.1 mRNA upstream 366014 8662476 ~ 8674082 (-) False taf8
XM_039800915.1 mRNA upstream 366014 8662476 ~ 8674082 (-) True taf8
TU64005 other downstream 94396 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 175752 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 395097 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 783145 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 794887 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 1394068 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1411869 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1728532 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2346257 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3592479 11888941 ~ 11891046 (-) False srxn1

Expression Profile