RNA id: TU64117


Basic Information

Item Value
RNA id TU64117
length 3405
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G48010
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8330117 ~ 8333521 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATTTGAGTTTACTGACTTTATGGTCTTTACTACCAACAATAAATATCCTGCAACACAATGTAGCTTATAGTCACAGACAtgcttcaaataaaaatataaaaagacaaaaactattCAAGTTAGATCGGGCTACCGCAAGAAAACAGATCCAACGTTATTGCACATTTCTGTACATGGCCTGGTGGGAAATTTGGCAAACCAGATAAAGTCAGGACTAAATGTTCTATTTCACATGTGACCCCTGTGATCAGTGATGGCCCCCGTGTTAAGACTGAGTGGTGAGAGTAAACAGGTGAActaaggtttaaaaaaatagaaaaaaagacaaggcAGATTATctgaaattagaaaaaaagattcaaGTTAGAGAAAACTATAGGCTAAACAAAGGCCCTGAAATACAGTGCAAGAGTTGAGCAAAAACATTTACTGGTAAATCTATTGTATTAGTATTCTTTCTCTCAGCCACAGCAGCCATCTACTTCCACTTCCTAACAAAGAAGTATATCCACTCTTATGTAACACGAGCCCTGACAATACACACGAATATTGCTTTGGTGCACACGATTCCAACGATGATTTATGATACATAGGGAAATCTACAGTTTAAGGCAAAGCATTAGACtgttacatacacaaaaaccgtctctatcttttctttttttgagttGTGGGGTGATGTAACCATGCAGACAGAGCACTAATGGCCAGTATGTGACTGACAGACTGTATGTAGATACTAAACAAACTAAGTTtgagaaaccttttttttttagaactcTTTCTCAATGGAAAAATATGAAAGGATAGGTTCACATGGTTTCATGTCAAGAGAGGGTGCGAGTGCCTGtacaaagcagtaatcagagcaataaaaaaaatatatattctaaTAGTTTGCAGCGGTTATGTTcttaaagcacaaataaacacacacacacccctacgcAGGAAGGTGCCGCATTGTTGAGTGAAAGCAGAGCTCCATCCTGTccgtttctgtgtgtctgtcagttagCGTCGATATGAGACGCTgaggggcaaaaaaaaaaaaaaaaaacgccctgCGCGCTGTTACTGGCCGGGGGTTACACACCCACGCGGGGCCCAAAGGCTCTATGACCACGCCCAGAACCATCGCGCACACAGCAAGatcaaaataaaagagaaaatactggcaGAGGGCGGGGCCTCTGCAGGTACAGACACCACAGCACTTCTAGTGTCACAAGTGATGACAGAGGGATTacttttgtattagtctatacattgtcaacgtgatatcatgactttgcgtaaacatacacgccactttaagccaagtggtgtgttatctgtacgcattttgagctgtATGTTTACACCGAAGCATGGGATGTTGCATttggagctatccgcgtgtacagtggacgggttgggtttaggaaaagaacaacaggACGGTTGGATTTAGTAAAACAATAAGgggacgcgggacaacaacggcaCAAAGAAGAAagcggttgggtttaggaaacgtgacacgcgggacccccggtctcctgggtgaaagtcctgtgtatgacccatccccccccccaccaccaacaTCCCTACGCGGTCATattactcgctacggcgtaaattgacacgcaatcgcgaggtaatgtaagtcaatggaggccaaacggcgttgataaacacgctacaaaatgattatgcgtcttgataacgcgCCAAAatatcatacgaattggcgtgtcatacatatgccactacatgagatcagtctgacatTGTTTTAAGAGGAAAGCACCGCATATTATACCTTTAACGTGCTGGGGTACAAATCCAGATTCCGGGTTCTgtgcaaaaatgtatttcaaggtTAGCTAAACTGGGAACatgctgaaaaagaaaaatttggatggtgcaacaaggcacgcctgcttggttctttccaTAGACAGTTAACGAAATGGACAAAGTGACACCGTAGACTTGtaacggagaccagtgaaggataatAGAAgcactttcccggtgctggctgagcgttactgagcagcctccaactgagcttgacgacgtagatgtgatgtgagtaacctgtctgaaagtgtgaagtcttctggtagctgtgccgagagaaatctcaatcattcccaatcttacagagacggagagcgtaggtatatgtaaggagataacataggcacaggctaattattgctaactaaaatggtagttaacattagtaattaaacttcaacagctaatgtaagtcgaaactgatggcttgttagcatcaaaatggctccatagtaGGTACGCTTTGCGGAGGctagcttacccccttggttcttTTGGCAAATGATTGCAAAGATTTACaatgaatatgtttacagcatttcatctctaactgggatgttttgggaccgattaaTAAAtcggtaagagcaaatgaggtgtatccagctaatttaaatagctcaccttACTGTATTCAACTGTGTGAACCGTTAACTTCtctaatattgtatgtggtgttaTATTTCTACaggggtgcacctaaataagtTCCTTCCCGGGAATATTTTTGCAAGAGGCACGGCCGAttgagattggtttaaagaaatgcaaccaaccccagagcgtttttttttttcctcctatcctagaatgtatgctcctgttgccagaccttcctcagcagtgctgtggagataggtctggcacaACAACGACAACAAAGATTTTGTCCCCCATCTCTTACATTGGAAGCACATTAGGAAGGGATCCTTTAACGGTCAGTATGGACAAGAGGAATAATTGCATGCTTCAGTGTACATGACCTGACTATTGAAAAAATGTGAACTTATCCTTTAAGTACCAGACATACTGTAACTTCACCGAAGGGCCACAGATAATGGCCAAACATGCACCGGCGCATGTCAGAAGCCTCTTTGCCTGAGCCTGCAGCTGCCTTGGAACCATGACTGAATGCTGGGCTATGTGTAAACTACAGAAGACTAGATCTACCTATAGCATTGCTGCTTAGTTAGTAAAATAAATCATGTAGAATATTGGCAACTTGCCCTGTAAAGTCTACACACGTTTCAAATGAAACAGAAAAATGTCCTCTCAGCGGTGGCCGTGTGTGCATCAGTAACAGTAGTAGAGTTGCGAGGGCAGCCCCCTGAAGGTGTCGTCGTCCTGCCCGCTGGCCTGCTCCCCTTCAAACAGCATGGCGTCTGGAAGCACCACGCCCTCTAGTGGATCCGGCTGGCAGAACTCCACTATGAATTCCTCCTCACAGTTCAGAAGCACTCTGGACCACGCACACGAGTCCAGCTGGGCCGCGATGCCGCCGTACTCCTCGGGCAGAACCGAGCGCGGGATGTTCCGGTGCAGAGAGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64097 lncRNA downstream 33649 8285262 ~ 8296468 (-) True LOC120559498
XR_005639295.1 lncRNA downstream 33655 8281947 ~ 8296462 (-) False LOC120559498
XR_005639298.1 lncRNA downstream 33655 8281947 ~ 8296462 (-) False LOC120559498
XR_005639297.1 lncRNA downstream 33655 8281947 ~ 8296462 (-) False LOC120559498
XR_005639296.1 lncRNA downstream 33655 8281947 ~ 8296462 (-) False LOC120559498
TU64146 lncRNA upstream 47596 8381117 ~ 8382101 (-) False ada
TU64266 lncRNA upstream 278177 8611698 ~ 8654319 (-) False G48128
TU64267 lncRNA upstream 278177 8611698 ~ 8654319 (-) True G48128
TU64292 lncRNA upstream 370870 8704391 ~ 8704711 (-) False LOC120559289
TU64295 lncRNA upstream 374019 8707540 ~ 8707965 (-) True G48153
XM_039800967.1 mRNA downstream 74151 8252178 ~ 8255966 (-) True fitm2
XM_039800409.1 mRNA downstream 112236 8188068 ~ 8217881 (-) True jph2
XM_039800413.1 mRNA downstream 155125 8172190 ~ 8174992 (-) True LOC120558991
XM_039800410.1 mRNA downstream 160391 8164469 ~ 8169726 (-) False LOC120558989
XM_039801740.1 mRNA upstream 48258 8381779 ~ 8409734 (-) True ada
XM_039800902.1 mRNA upstream 239158 8572679 ~ 8577776 (-) True LOC120559283
XM_039800908.1 mRNA upstream 299534 8633055 ~ 8643551 (-) True gdi1
XM_039800914.1 mRNA upstream 328955 8662476 ~ 8674082 (-) False taf8
XM_039800915.1 mRNA upstream 328955 8662476 ~ 8674082 (-) True taf8
TU64005 other downstream 142566 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 223922 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 443267 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 831315 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 843057 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 1357009 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1374810 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1691473 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 2309198 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3555420 11888941 ~ 11891046 (-) False srxn1

Expression Profile