RNA id: TU64267



Basic Information


Item Value
RNA id TU64267
length 890
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G48128
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8611698 ~ 8654319 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TAATTTTTAAATCATAATTTATAGACATCTTTATTTTCAATTACAAGACAatgtacattacatgtcatgGCAATTGCACATTAAAAAGCAGAACTGAGGCACTGTTATTAAATGAATGCACCTGAAGCAAGTAGTAAACTTTAAGGgtgagcagtgttttttttatatgaataaATAACTCGTCAAGAAAATATAGGATTTAAGTGGTGGCACTTGAGTTGGATAGTCTGTAAGAGTGAGAACAGAACTAATCCCATTTTAAGTATTGGCATATTTTTGTAAGGCAATTCCAAAACAGTCACAGACAGCCATCTATTATTTATACACAGGCACATCTTGCATTAAGCAGTAGTCATTAAATTACAGTtgagttgagaaaaaaaaaatgaagtaaGAACTGAGGTCTGAAACGGTCCTACAGCATCCAGCAATCACATTCATGTTGGCACAGACAAGACATTCTCTGGTTACGAGAAATTATTGCTAATTATTTCACTGAAAATAGCCACTGTGTATGGCCAACAGTGGCACAAAAACATCTCTTAGCACATGCACTCAAAACCAACTCGTATAAAAAGGTGCATCCACTTTGGCACTTGCAAATGGGGAGAGATGAAATGGAATGCGCCTTGCAAGACAACAGTATCCCACAGACAGTTGTGGAAGGATTTAGGAGAGAAATCTACAGGAGAGGTTATCAGAGGGAAAGTCTATCTGACAAATATCTTCAAAGAAAAAGGCCCAAACGCACACAAGCTACAAGACAGGGAGGGACTCTCCTAGCAGGCACTGAAGGactgaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU64146 lncRNA downstream 229597 8381117 ~ 8382101 (-) False ada
TU64117 lncRNA downstream 278177 8330117 ~ 8333521 (-) True G48010
TU64097 lncRNA downstream 315230 8285262 ~ 8296468 (-) True LOC120559498
XR_005639296.1 lncRNA downstream 315236 8281947 ~ 8296462 (-) False LOC120559498
TU64292 lncRNA upstream 50072 8704391 ~ 8704711 (-) False LOC120559289
TU64295 lncRNA upstream 53221 8707540 ~ 8707965 (-) True G48153
XR_005639096.1 lncRNA upstream 89016 8743335 ~ 8746512 (-) True LOC120558360
TU64434 lncRNA upstream 422756 9077075 ~ 9088743 (-) True G48255
TU64476 lncRNA upstream 556605 9210924 ~ 9212825 (-) True G48285
XM_039800902.1 mRNA downstream 33922 8572679 ~ 8577776 (-) True LOC120559283
XM_039801740.1 mRNA downstream 201964 8381779 ~ 8409734 (-) True ada
XM_039800967.1 mRNA downstream 355732 8252178 ~ 8255966 (-) True fitm2
XM_039800409.1 mRNA downstream 393817 8188068 ~ 8217881 (-) True jph2
XM_039800413.1 mRNA downstream 436706 8172190 ~ 8174992 (-) True LOC120558991
XM_039800914.1 mRNA upstream 8157 8662476 ~ 8674082 (-) False taf8
XM_039800915.1 mRNA upstream 8157 8662476 ~ 8674082 (-) True taf8
XM_039800918.1 mRNA upstream 21798 8676117 ~ 8677135 (-) True g0s2
XM_039799713.1 mRNA upstream 28312 8682631 ~ 8700177 (-) True camk1gb
XM_039800911.1 mRNA upstream 48646 8702965 ~ 8705483 (-) True LOC120559289
TU64005 other downstream 424147 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 505503 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 724848 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1112896 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1124638 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 1036211 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 1054012 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 1370675 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1988400 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 3234622 11888941 ~ 11891046 (-) False srxn1

Expression Profile