RNA id: TU64434


Basic Information

Item Value
RNA id TU64434
length 698
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G48255
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9077075 ~ 9088743 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggggggggggagggggggacGCGGGGGGGGGAGTCGCAGTTCACTACTGTGCCCAGGTGAAATCTGAATGCGGTCTACGATAGTCCAtgcatagagagagacagagacagagagagagacagagagagagagagagagagagtgtgtgcgaTTCTTTATTTTGGCTCTCGGAGTAGTTCAGTCTCTCTTactatgaagaaaaaaaaatccagttcGGAATGGTTTTTCAGAGAGGGGGAAACAGATGTTTAGTCGGGCTTGCTCtttcaccttcttcttcttctccttcttcttcttcttcttcttcctcctcctcctacggGGGGCGAGTCGTCTCCTTTCACCATCCGGTTTCGTCCATCAgtgccacatactgtatgttgatcGACgtgtgtcagtcagtcagtcattcaGTCATtcggtcggtcggtcggtcCCCGCAGGCGGTTATTCGGCGGATAATATGTGGAGGGAACGCGCGTAGAAAAGCCTCcggtaaaggtaaaggtaatGGTACGGCAGGGTAGATTAGGCACGGTGCGGGGCGAGCGGAGAGGGAGAGGCGATGCCAGCAGACATCGATCCAGAGAACAAACTGAACATTAAAAACTCCTCCCTCCTCGCCTGGACTCGATGATGGCAGCGAGACATTTGTTACACTAGATAACCAGGAGTTTATTAAAGGAACAGAGgccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639096.1 lncRNA downstream 330563 8743335 ~ 8746512 (-) True LOC120558360
TU64295 lncRNA downstream 369110 8707540 ~ 8707965 (-) True G48153
TU64292 lncRNA downstream 372364 8704391 ~ 8704711 (-) False LOC120559289
TU64266 lncRNA downstream 422756 8611698 ~ 8654319 (-) False G48128
TU64267 lncRNA downstream 422756 8611698 ~ 8654319 (-) True G48128
TU64476 lncRNA upstream 122181 9210924 ~ 9212825 (-) True G48285
TU64497 lncRNA upstream 193553 9282296 ~ 9282522 (-) True G48306
TU64502 lncRNA upstream 196174 9284917 ~ 9285252 (-) True G48311
TU64646 lncRNA upstream 290257 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA upstream 290257 9379000 ~ 9385221 (-) False LOC120558858
XM_039800853.1 mRNA downstream 86764 8985972 ~ 8990311 (-) False zfp64
XM_039800852.1 mRNA downstream 86764 8985972 ~ 8990311 (-) True zfp64
XM_039800759.1 mRNA downstream 133268 8937739 ~ 8943807 (-) True sall4
XM_039800758.1 mRNA downstream 143786 8883251 ~ 8933289 (-) True LOC120559208
XM_039800986.1 mRNA downstream 201953 8849910 ~ 8875122 (-) True nfatc2a
XM_039801629.1 mRNA upstream 80139 9168882 ~ 9175214 (-) False znf217
XM_039801630.1 mRNA upstream 80139 9168882 ~ 9175214 (-) False znf217
XM_039801636.1 mRNA upstream 80139 9168882 ~ 9175133 (-) False znf217
XM_039801635.1 mRNA upstream 80139 9168882 ~ 9174740 (-) False znf217
XM_039801633.1 mRNA upstream 80139 9168882 ~ 9174733 (-) False znf217
TU64005 other downstream 889524 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 970880 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1190225 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1578273 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1590015 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 601787 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 619588 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 936251 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1553976 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2800198 11888941 ~ 11891046 (-) False srxn1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045090 False 832 lncRNA 0.44 2 NC_007134.7 38487415 ~ 38497756 (-)