RNA id: XM_039799970.1


Basic Information

Item Value
RNA id XM_039799970.1
length 4543
RNA type mRNA
GC content 0.55
exon number 20
gene id plekhg5b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9427206 ~ 9519455 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAAACAGAGCGAGCCTCTCAGGTCTGTCATGTTCTTTGGCCTCTTAGATTAACTCCATCCGCTGTTTTCACCCCGAAGAtcggttttatttttataacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagcaagagcAAGAGCAAGAGCAAGTTCGATCCGGGTTGGGACTAAAACTTTCCCCACCTGCTGTCTATTGGAGATATTGATTGGTTCTTCCACTGAAATTCAAACGAGTTGCCTTTCCTGGGAAGTGGAGTGTTTTTATGGTTTGCCACCACCCAGACTGCCAAGACCTGAATAACAAAAGCCCCCTTCACCTGTGCGAGTCATGTGACTCGCTCAGCCACTCGGAGAACACAGACAACATGCACTTTGACCGGCACCCCCGATTTGACTTACAACCTCAAGCCTCCATCCTGGCTCGGAACGTGTCCACGCGCTCCTGTCCCCCGCGCACCAGCCCCCCCTCTGACCTGGAGGAAGAGGACGAGGGGAGCAATGAGCGCGGGGAGCATAAAACAGGGGGGATGAAGTTGGTGAAAAAGAAGCCACGGAGACGACACACTGATGACCCCAGTAAGGAGTGCTTCAGCCTTAAGTTTGATCTCAGCGTGGACATAAACACAGAAATTGTACCTGCgatgaaaaagaaaaccttGAGagaGGTTCTAGGTCCAGTGTTTGAGAGGAACGGCATTGAGCTGTCCCGGGTCGACCTGTTCCTGGATCAGTCCAACACGCCGCTGTCCCTCAACTTTGAGGCCTACCGTTTCGGAGGACACTACCTGAAAGTCaaagCGCGCCTAGGTGACGAGCTGAAGGTGGAGCAGGGTGTGAAGGACTTGCGGTCGCTCAGTCTGCCCAACATGAAGCCCTCCGGCGGCCAGAGCCCCTACATCCTCACCCCAGGCAGCGAGAGGGTGGAGCATGGATCCCTGGGACGCAAAGAAAGCGTGGACCTGCTGGGTCAGGCTCGAAGGAGGAAGAACATGACCGAGTTCCTGGGAGAGACGAACATTCCTACCCCGGAATCTCTGGGACAGATCGGTGGCTCTCTGCCCGGCATCGGGGGCGGTCCTGACAGCTGGAAGAACCGCGCCGCCAGTCGCTTCAGTGGCTTCTTCAGCTCCAACGCCGGAGCGGGGCCCTTTGGCAAGgaggcGGACCGTCTGGAGCTGCTCCAGAGCAAGCTCCACTCCTACATGATGTTCGGGCTGCCCAAGGTGCCACGGCAGCTCTCCTTCCACCAGGACTcgtgggaggaagaggaggaggagacagaccTGGCCCTGGAGGACAGTTGGCAGAAGCTGCTGGACAACCCAGAGacaTTGACAAGGCGACAGTTCCACCAGCAGGAGGCCATATGGGAGCTGCTGCAGACGGAGGCTACCTACATAAAGAAACTCCGAGTCATCACCGATCTGTTCCTGTGCGGGCTGCTGAACCTGCAGGAGAGCGGTCTGCTGACGGAGGTGGAGCCCGCCAAGCTGTTCAGTAACATCCAGGAGATAGTCCGCCTCCACACAGCCCTGTGGAACCAGGTCATGCTGCCCGTCCTGGAGAAGGCCAGGCAGGGCCGCACTCTGCTCGACCCCACGGACCTTTACCACGGCTTCCGGACGtttgGCTCCAGGTTCCAGCCCTACATCCTTtactgcatggaggaggagggctTGATGGAGAACATGCGCACGCTTCTCAGGGACAATGAGCTCTTCAGGACCTACGTCACGTGGGCAGAGACCCATAAGCAGTGTAACCGCCTAAAGCTGCCCGACATGTTGGCGAAGCCTCACCAGAGGCTGACCAAGTATCCACTCCTACTGAAGAGCGTTCTCAAGAAGACGGACGAGCCGTCGGCCCGCGACATTGTCAACAGCATGGTGGCCGCGGTAGAGGGCTTCATCAACAGCGTGGAGTCCCGGATGAGACAGCGCCAGGAGCAACAGAAGCTGGCCACCATTTCTGCCCGTATAGACTCCTACGAGGCTGTGGAGGGCAGCAGTGAAGAAGTGGAGAAGATCCTCAAGGAGTACAACCGCTTCGACCTCATGACTCCCATGAGAGGAATCTCCTCGGAGGAGACGCGACAGCTGCATCTTGAGGGAGCGCTGAGGATGAAAGAGGGCAAAGACAGTAGGATGGAGGTCTATTGTGTCCTGTTCACCGACCTGCTGCTGATCACCAAGCCAGTGAAAAGAGTGGAGAAAGTCAAAATCATCCGACAGCCTCTCCTCATTCACAATGTCGTCTGTAAGGAGCTCAAAGACCCTGGCTCCTTCATCCTCATCTACCTCAATGAGTTTAAGAGTGCAGTGGCAGCCTACACTTTCCAAGCCAACAGCGCCACCCAGGGGCGGAGCTGGGTCGATGCAATCTGCAATGTCCAGAACCAGCTCCAGAGGCTTCGCACTGAGGAGGTCCTCCGCCAGCAGAACAGTCTGAAGACATGTACGCCGGGCGAGGAAGACGAgctggaggaagaagagagcagCAACTCCACCACAAGTTCCCCGTGCCTGAGGCACAAAGACCAGCAGAACTCAAGCCAATCGGATGGTTCCACTGAGACCCTGTCGGTGATGGACGTCGATGAACCAGGCGAACACCAGCATCCTTCGCCCAACATGAACCTCAAGGGAACCGGTAAGAAAGACTCGGATGGGGCCCCGCTGTCCGAGAGGTGTGAGGTCCAGCGGTCTCGGCCGACGAGCCCCCACAGAGTTCCCTCCGGTCTCTACCCTGAGCACGATCGGGAGGCGGGGCGTGACGGCGAGGAGGAGATGGACCTGCAGTGTCGCTCGCTTTCCATGGACAGCGCCTACGGTACCCTCTCCCCTGAGTCCCTGCTGAGAGAACTCCAGCCTCAGCCGGGCCAAAGCGAAGGCGAGGATGGGGAGGCCGAGGAGGTGGAGCAGGAAGGGACCGAAATAGCtgaggatgaagaagaggatGATGAGGATGCTGCCTCACTGGGGTCCCAGCTGTCGGTAGTCCAGTCCTCTAAACCGCGCCGGCGGCCTCACGTTCAGCCGCGACTCCACTGCCTCCAGAATGTGTCCACTCTGGCCTTGTCCCGCTCCGAGGACAACCTGCTGCAGCGCCTCCACGCTAAAAGCGCCATCTCCCACACGCACTCCCTCAGATCGCAGGCGCAGGACCAATCCCGACGTAGGGACGTGAAGACCTCGCCGCTGGCGCACAGCAAGAGCCTGACGGAGCTGGGCCAAAACTGCACGGAGCTGTTTTCCAGCGACCTGGACCAGTCCGACGACTGCTTGAGCATGAGCATGCCCTCCGACAAACTGTGCGCCACCCTGAGGAGGGCGGAGGCCATGCACGGGCACGCGGGACCACGGGAGGGCGGCGCTCAGTCCCAAAGCAACGGCTCCGACGGGGAAGTGGCTCCGTCCGCCTGCGTAGAAAGGAAAGACGAGTCAACAGCCGCCGGTGATTCGGGGGAAATGTCTCCTAAAAAGAGGAAATCCCCAGCCCAGCAGCACAAGAAGCTGACGCTAGCTCAGCTGTATCGGATACGCACCACTCTGGTCCTCAACTCCACACTCACTGCATCGGAGGTATAACCACTCATCCAAACAACTGACCAGTGGCACACGGGCATAATAAGGAACGACACTTGTTGTGCTTCGATGGACTGAATTTCAAAATGCACTCTCTCGTGTTGCCCTCTCCCTTctggttgcttttttttttggatacTGCTCGCACTAattttttgcatttcaaaatTTTTTCTTTGCTCTTGCATTGGTTTCCGAACTCATCGCGTGGAAGGGAGAGGCTGAGAGACATGAACTGCTTGCACTTTGCAATGGAAGTAGCATTATAGGGGCTGGGACCTTAGGGTGGACTGCGGGAGTGTGAACCCGAGTGGAGCTGAATCCGGCATCTTCTCCGGCTCAGTTACCAGAGTCAACGAGAAGGAACACTACGTTTTTGAAAATGTCGTCTAtatgtggcaaaaaaaaaaaaatctatactgCACCTAGGACGTCCTAATATTTATACTACTCCTGGTTTGctttaacaaaagaaaaaaaaaaagaagaagaaaattgcACAGTTATCTATGTTAAGTAGAAGAATCACTACAGGAGTGAATATACATTTACAGTCACACAATGAATTAGAATTTGTTgtttgctgtttgtgtgtgtgtgtgagtgagtgagtgagtgtgtgaatgaatgtCTTGTGTTCGAATGATAACACGGTCCTCAATTCCTGACTGAACCAAAACTAATTCCCATCTCCTGTGAATACGCTAACACACCCAAAGATGGAAGTAGATTCCCCAAGGAAAAGAAAACGCACCCAAAAAGGATGGGCTGATACAGCCAATCATGTTTCGACACACAGATGGACTTCCTTCTTCACTGTTACTCTTGGTTGAACTAATGCCAATTTGGTTATGTTACACTAATGAGAGTTGATttcctaaaataaaacaatgactGAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64646 lncRNA downstream 40685 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA downstream 42379 9379000 ~ 9385221 (-) False LOC120558858
TU64502 lncRNA downstream 142348 9284917 ~ 9285252 (-) True G48311
TU64497 lncRNA downstream 145078 9282296 ~ 9282522 (-) True G48306
TU64476 lncRNA downstream 214775 9210924 ~ 9212825 (-) True G48285
TU64661 lncRNA upstream 87673 9564964 ~ 9565214 (-) True G48430
TU64673 lncRNA upstream 250583 9727874 ~ 9729476 (-) False c1qtnf12
TU64672 lncRNA upstream 250934 9728225 ~ 9730079 (-) False c1qtnf12
TU64674 lncRNA upstream 250934 9728225 ~ 9729476 (-) False c1qtnf12
TU64671 lncRNA upstream 283599 9760890 ~ 9762449 (-) True G48436
XM_039800159.1 mRNA downstream 19197 9380148 ~ 9408403 (-) False LOC120558858
XM_039800160.1 mRNA downstream 55970 9369961 ~ 9371630 (-) True irx7
XM_039801180.1 mRNA downstream 72970 9312886 ~ 9354630 (-) True LOC120559472
XM_039801181.1 mRNA downstream 135462 9287548 ~ 9292138 (-) True cbln4
XM_039800345.1 mRNA downstream 228626 9180687 ~ 9198974 (-) True bcas1
XM_039799978.1 mRNA upstream 44804 9522095 ~ 9535683 (-) False nol9
XM_039799977.1 mRNA upstream 44804 9522095 ~ 9535432 (-) True nol9
XM_039799982.1 mRNA upstream 71379 9548670 ~ 9685634 (-) True klhl21
XM_039799981.1 mRNA upstream 71379 9548670 ~ 9569582 (-) False klhl21
XM_039799980.1 mRNA upstream 71379 9548670 ~ 9556423 (-) False klhl21
TU64005 other downstream 1240049 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1321405 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1540750 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1928798 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1940540 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 213239 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 231040 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 547703 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1165428 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2411650 11888941 ~ 11891046 (-) False srxn1

Expression Profile