RNA id: TU64646


Basic Information

Item Value
RNA id TU64646
length 3119
lncRNA type sense_over
GC content 0.40
exon number 5
gene id LOC120558858
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9379000 ~ 9408403 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGGATCTTATTTTGGGTTAATTCTTTTATACGGtttaatttttatatatttgaaggggaattcaaaaagttcaacGGGAAAAAGTATTTCAACAGTTTctttaactgtttcactgttgttgttttttaagttcagaaatgcaacatctttccaaaagtcaactaGTAATTAAAATAATCGGGACTTCAGTATTGACCAAAATGACTgggattatgattttttttcttcagaatcGAGCAGCCCTGTTATAAATGACTCTTCTTTTCTCACTGCACACAGACCGCTCTGCACTGGGCTGCCAAACATGGCAACAAGGACATGGCCTCTCTGGTGGCTAACGCAGGCGCTGATGTCAACACCAAATCACATGTGAGTACCCAGGTGTTCATCAGGAGGTGACGGGCACGTACAGTAGGTTGTTTGATTTGAACTTGTAACAACAGGACAACAACACGGCTGCTGGTTTCTTCTTCTGCGCCCCTCAGTGATGTAATGCTGAGGACAATGGTCCAGCTGTGCCAATGTATCACAGCAGCACGTGTTGCGGGCCTGCAGAAGTACTCCGCTAATAAATCATGTCATGTCACGTTAATTGTTTCCCAAAACGGTGTGTCTATGTGCCAGCATGCACAACTCTAGAACTAAGCAATTTTCAGCGAATTACCAGGCAAttatgtttgtatcattatCTTATGTTTCCATAACCTTTGctaatttgtgtattttttttccttccacgCTGTTTTCATTGGCTGCGTTTGGGCCTGGGAAACTCTAGGGGGGATACACACCTTTACACATTGCAGCGTTACATGGTCATCGGCATATTCTAGACCTGCTCCTAGTGACATATGGGGCCAAAGACAATTTAAGGGACTACAGCGGCCATCTTGCCTGCCATTATCTGAACATCAAAGAACCGGAGGGTCCAGAGGAAGACAGCGAGCTGCATTTTCAAGTCACTCAGGCCAGAGAACGGAACAGGAACAGAAAGTTGGTATCGCTCTTTCACTCCAAGAAGAAGTGGGGCTCAGCAGAGGAGCTGGCGCCgatagaggaggagaggacGGCGTCACATCAGCTCATCCTTCCTGCATTCAGGCCCAGAAAATTCTCCcgctgagaaaaaaaattaaaataaacagacACGGGGAACGATTTCTGCTCTcctacactcacacatacacttaATCCTTACATGCATATATAGTTACACACATGATGTAAACCTACATGTATGGAAGTGTTAATGTGCATACTTGTTATGTACACAAACATAGACACCGCTTACAGAcacaatcccccccccccacccgttTGCCGATGCACCTACACAGCTCATCCCAGTACTGAACACTGATGCTTATGTGTATTATCAATATTTATACTGACCATAAAGTATTTCTTGAAGCCTTTTTTGAAATGAATGTTGCTATATGTCACTAATGCCTTAATAAGCTCGAGTCACGTGGATTCTTTAAGCTTGTCATCGCCTTTTGAGTTAAaatgaacaacaacaacaggactGCAAAAGTGTCTCAGTGTAAAGAATATGGTTTGAGATATTCTGCTTTAAAAGAAGCAGACTTATcctttaaaaaaggagcacactGGTGGTTTGTATGTTTTGGCCTATTAAAAATCAGTTGTACTATCATTTGTACTTAATGCTGAACATTTTCCAAAACATACCACAAGTTGTTTGACTGACTTTTGACCTTTCACACAGCTGTTGATTTAGATCTGTCAGTATGGCATTATAACACAATTGCAGAGACACTATTAAGTAATCCAttatgtgggaaaaaaaattacTGAATTCATTATTCTAAAATCACAATTACTCTGTCAACTAAGGCACTGTATGAAAGTTAGTAATGTAGGGAGGGGGGTGAACCTTCCTGTTTAAACAAAGACCCTTCAGTGTTTTTAATAACTTATTtggatttagaaagaaaaaaaaaaaaaactgcacagcCCCTTCCCTACAATATCTTAAAATATTACATCATTGATACAACTCAATTCACcattaataacaaaaaatgacaaaaagaatTTAACATGGTGGACCACAACCTTTCCATTTAACCTTAATATGTTAATGGCATAATCATTTATTAATTTTCACTATTTTTGCATTTGATCCTTTTGATTTACAATTAATCTGCAAGgggaattttaaataaaatataaatcttTGGTGAGGACAACATTAAAGCTCCTCCCCTGCTCTCCCAATGCACCTCCCACCAGCaattaggagaaaaaaaaatacataacccTCCTCCTTTCCTGACCCACCTCTTCTCCATCTTTTTGCATAGTCCTGAATGGCAATGAAAGTCTTGTTGACAGCCGAGATTGTGATGCAACAAAACCATTGCGTTGGCAGAAAAGTTGTAATTCTCCAATATTAGATAATGTCCATGAATTCATAGAGCTGGCAATCTTCCTCTACCATTCAAATCaaacagagaactctgtaatgaatCTTTTATCAACTCCTACATTAGGCCAATATGGTGGGATCAGGGGAGAACTTGCTCGCGGCACGCGTGTTCTGTGTTAATTGGCTTCAAACATTCAAACCCATCAGCGTGTTACTTTATCTGAGCCAATGAGACATTCCATTTGGTTTGAGTTTTCATCGCTACCTCCACCGCTAATACAGCTCACGGTTTGGATTCAATGCCAGTTGGAAGGGGTTGTCACTCAGCCACCTTCGGTATAGACTCTAAATGTCTGTCGTATAATGGCTGATTTTCGGTCGCGTTGCAGTTTGTCTGTGCTTGCCAGTTGTTGGCACGACGTTTGCCACAATATCCGACTCATAATCTGGTAAACTTGTGTCAAAGTAGCGATTGTCGACGGATTGTCCTTTAAATTCTTTTTAATTTAAGTTCTGAAGTGCTAGGTTAACGTTTGAAAAAGACATTTGCACTACTACATTTACGTTGTCCATCGGTCTTTTGGATTGCTTCAGACATCACTTTCATTTGTTGGAAAAGATGTTCTTTGTAACCATTGGTTTGTAAGTTCGTCCCATTTGTTGAAGTTAACGCTCAAGCTAATTGTATAATCTCAAAGTGAAAAACTTGCCTCCGTTACTGTTGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64502 lncRNA downstream 93748 9284917 ~ 9285252 (-) True G48311
TU64497 lncRNA downstream 96478 9282296 ~ 9282522 (-) True G48306
TU64476 lncRNA downstream 166175 9210924 ~ 9212825 (-) True G48285
TU64434 lncRNA downstream 290257 9077075 ~ 9088743 (-) True G48255
XR_005639096.1 lncRNA downstream 632488 8743335 ~ 8746512 (-) True LOC120558360
TU64642 lncRNA upstream 40291 9427206 ~ 9493872 (-) False plekhg5b
TU64661 lncRNA upstream 178049 9564964 ~ 9565214 (-) True G48430
TU64673 lncRNA upstream 340959 9727874 ~ 9729476 (-) False c1qtnf12
TU64672 lncRNA upstream 341310 9728225 ~ 9730079 (-) False c1qtnf12
TU64674 lncRNA upstream 341310 9728225 ~ 9729476 (-) False c1qtnf12
XM_039800160.1 mRNA downstream 7370 9369961 ~ 9371630 (-) True irx7
XM_039801180.1 mRNA downstream 24370 9312886 ~ 9354630 (-) True LOC120559472
XM_039801181.1 mRNA downstream 86862 9287548 ~ 9292138 (-) True cbln4
XM_039800353.1 mRNA downstream 180026 9180687 ~ 9198974 (-) False bcas1
XM_039799968.1 mRNA upstream 40685 9427600 ~ 9519455 (-) True plekhg5b
XM_039799971.1 mRNA upstream 40685 9427600 ~ 9507250 (-) False plekhg5b
XM_039799970.1 mRNA upstream 40685 9427600 ~ 9477291 (-) False plekhg5b
XM_039799969.1 mRNA upstream 40685 9427600 ~ 9477291 (-) False plekhg5b
XM_039799972.1 mRNA upstream 40685 9427600 ~ 9476288 (-) False plekhg5b
TU64005 other downstream 1191449 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1272805 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1492150 7815151 ~ 7886850 (-) True G47937
TU63850 other downstream 1880198 7485427 ~ 7498802 (-) True G47814
TU63848 other downstream 1891940 7485427 ~ 7487060 (-) False G47814
TU64676 other upstream 303615 9690530 ~ 9698107 (-) False olfml3a
TU64679 other upstream 321416 9708331 ~ 9724134 (-) False olfml3a
TU64778 other upstream 638079 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 1255804 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2502026 11888941 ~ 11891046 (-) False srxn1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1572944 True 1172 lncRNA 0.42 4 NC_048580.1 43217872 ~ 43219764 (-)