RNA id: TU64673


Basic Information

Item Value
RNA id TU64673
length 1603
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id c1qtnf12
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9727874 ~ 9753686 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccattgtgagcatgttagcattctaatgttagcatttaaGAACCGTTGCGACTAAGTACAGCCTCATAGAGCCGCCAACCTGGCTGTAGACTATCATGGCGTATTCATATTACAACGGAAAAATGAGGGTCTTGCGTTCGCCGTTGGTTCAGCCCAGTATTTACCACCCCGGGACTCCCAGTGGCGCTGTACCAAACAGCACCACCTTAGCTACAATGCCAGTGTCGCTAGCTGTAGattgctacatttcagagactCAAACGGTGTTTTAATgcacattctcatgaacggttTCGTACGATATAGTACGTAGTCTTTTTTTGCCCGTTTTCACTGGGAAGTGAACTCCGCTCCCCGACTTGAAAgctctgtgttttatgacccactCATTCACTCCGACCTCCTCCGTACTCGGTCCAGATcattcttatacagcagcagccactgtggtgcatacagcaaaaaCTATATGCAACGCATACAGATTACAGTGCATTATTTTTCGTAgttatatgtacgaatggttcatgagaacagcctgtttTATAACAAACCTGCTAGCTGCAGCTGATATATTTTAGCCAGGCATAGATATGAAGCCATTATTTTATCTTACACTTTTGGAAATTCAGACACAAGTAATTCCGTCTCTCAGTGTAAGCATGGTCAACAGCGATTGGTTGTGCCCACAAAGGTCAGTGGTCAAAGTTGATCCTAAATCAGGATCTGCTAGAATGGTCGACGTATTTGGGTTTAGGCTATGGGAGTGGGGATTGGTGAGGGTtagggtagtctatatccacgacgttccacttccgggattgccctCGTTTTGCcgaaaattccgccggatgtcactcttttcggccggatgtctaaTACtttccgcttcctttgtgtcTGCGTTCTaaagatttctgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagttagactatctgtccaatctgagttttctgtcgaaCGActtaaacaacctttgaacgtacacacgttacacaaaaacaagttccttcccgaggctattttgcagcggcaccgtgtcTCTGTCCGACGCTAAACACCGCCCACGAcaattgggattggtttaaagaaatggcaataaaccagagcacgtttttcctcctccgcagcgctgtagaggaaggtctggccatGCAAGACTAGTGTTAGGGTAAAAATACCAGGGTGAGCCGATCAGAGGcagaataagaataagaaaaagcaGTTTGACCGTGATAATGTGAATACGcctttagtcttttttttctttttttttgtgtctccaACAAATCAAGATTCACCTTTTGACCAAGACAGCTGTAAgataacttcttttttttaaccctaagattatttttacagtctatttTGTGTTATCATTTATCATGTGTCTATATTTTACtgtgttttattcttttcttgACATACACAgtacatgtaatgtaatttataaTAACTAATACACCAGTAACATTGAAAAGCCTTGAACTTTGATATGGTATTTATGTTTGAGGAAACGTATGAATCAACTGACACTCTCGTGGACTCTCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64661 lncRNA downstream 162660 9564964 ~ 9565214 (-) True G48430
TU64642 lncRNA downstream 234002 9427206 ~ 9493872 (-) False plekhg5b
TU64646 lncRNA downstream 340959 9379000 ~ 9386915 (-) True LOC120558858
TU64652 lncRNA downstream 342653 9379000 ~ 9385221 (-) False LOC120558858
TU64502 lncRNA downstream 442622 9284917 ~ 9285252 (-) True G48311
TU64671 lncRNA upstream 31414 9760890 ~ 9762449 (-) True G48436
XR_005639087.1 lncRNA upstream 34592 9764068 ~ 9766189 (-) True LOC120558310
TU64692 lncRNA upstream 54238 9783714 ~ 9785241 (-) False hipk1a
TU64729 lncRNA upstream 163492 9892968 ~ 9893826 (-) True G48479
TU64726 lncRNA upstream 187102 9916578 ~ 9918879 (-) True G48477
XM_039799985.1 mRNA downstream 3858 9689729 ~ 9724016 (-) False olfml3a
XM_039799987.1 mRNA downstream 4977 9689729 ~ 9722897 (-) False olfml3a
XM_039799986.1 mRNA downstream 6062 9689729 ~ 9721812 (-) False olfml3a
XM_039799984.1 mRNA downstream 29553 9689729 ~ 9698321 (-) True olfml3a
XM_039799988.1 mRNA downstream 32458 9689729 ~ 9695416 (-) False olfml3a
XM_039800367.1 mRNA upstream 192 9729668 ~ 9753686 (-) True c1qtnf12
XM_039800366.1 mRNA upstream 192 9729668 ~ 9751657 (-) False c1qtnf12
XM_039799740.1 mRNA upstream 36835 9766311 ~ 9783853 (-) True hipk1a
XM_039799744.1 mRNA upstream 57889 9787365 ~ 9881696 (-) False LOC120558654
XM_039799742.1 mRNA upstream 57889 9787365 ~ 9881696 (-) False LOC120558654
TU64679 other downstream 3740 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 29767 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1540323 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1621679 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 1841024 7815151 ~ 7886850 (-) True G47937
TU64778 other upstream 295518 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 913243 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2159465 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2397410 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2397410 12126886 ~ 12128425 (-) True G49083

Expression Profile