RNA id: TU64692


Basic Information

Item Value
RNA id TU64692
length 476
lncRNA type sense_over
GC content 0.58
exon number 2
gene id hipk1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9766311 ~ 9785241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTGCAGCTGACAGCGATGATGGAGCTCTGTCTAGTCGACGGTGCTCATTATAccgctgtctgacatttccacTGACGTTATGCACATTTCGCTCGTTTGACACGCGACGTGACTGTGGATTCGAGTCAGGTAACGTTATGACTCGCCTGCTCGCGTGCCCTCGTCCTTCCCGCTACAGTCCGCGAGCTCCAGCAGCAGGCGGCTAGCAGCTCCAGCCGGTCCgctgcagcagcacacacagccCGGCGAggagatgatgaggaggaggccTTAAACGTCAGTTCGGCTTCCGGGTGTTCACTCATCAAATACAGATTTAGTCTCGTCGGCGGACATGGCGTCGCAGCTCCAGGTGTTCTCCTCTCCCTCCGTGTCCTCCAGTGCCTACTCTCGCTCAAAGAGGCTCAAAGTTGAGAACCCTGCCTGGGATGTGTCCAACCAGCTGGGAGATAATGGTTACTACCAGCAGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639087.1 lncRNA downstream 17525 9764068 ~ 9766189 (-) True LOC120558310
TU64671 lncRNA downstream 21265 9760890 ~ 9762449 (-) True G48436
TU64672 lncRNA downstream 53635 9728225 ~ 9730079 (-) False c1qtnf12
TU64673 lncRNA downstream 54238 9727874 ~ 9729476 (-) False c1qtnf12
TU64674 lncRNA downstream 54238 9728225 ~ 9729476 (-) False c1qtnf12
TU64729 lncRNA upstream 107727 9892968 ~ 9893826 (-) True G48479
TU64726 lncRNA upstream 131337 9916578 ~ 9918879 (-) True G48477
XR_005639099.1 lncRNA upstream 229162 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA upstream 229162 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA upstream 229726 10014967 ~ 10016118 (-) False LOC120558372
XM_039800367.1 mRNA downstream 30028 9729668 ~ 9753686 (-) True c1qtnf12
XM_039800366.1 mRNA downstream 32057 9729668 ~ 9751657 (-) False c1qtnf12
XM_039799987.1 mRNA downstream 60817 9689729 ~ 9722897 (-) False olfml3a
XM_039799744.1 mRNA upstream 2124 9787365 ~ 9881696 (-) False LOC120558654
XM_039799742.1 mRNA upstream 2124 9787365 ~ 9881696 (-) False LOC120558654
XM_039799743.1 mRNA upstream 2124 9787365 ~ 9881696 (-) False LOC120558654
XM_039799741.1 mRNA upstream 2124 9787365 ~ 9881696 (-) True LOC120558654
XM_039799252.1 mRNA upstream 105314 9890555 ~ 9901658 (-) True LOC120558325
TU64679 other downstream 59580 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 85607 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1596163 7771936 ~ 8187551 (-) True G47934
TU64778 other upstream 239753 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 857478 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 2103700 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2341645 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2341645 12126886 ~ 12128425 (-) True G49083

Expression Profile