RNA id: TU64766


Basic Information

Item Value
RNA id TU64766
length 524
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120558372
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10014403 ~ 10018354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATAATTTTCCCTCTGTGTTGAAGCTTGAAGGGGGATCCATACTGATAAGGATAAACAGCGGGTCCAGGACTTGGCCCATGCCTGGGACCTCCCTTGCCTAACTGAGAAAAACAGGAGATGGATTTTTGAGAAGCTATTGATCCATGCTGTACTTCAGCAACTCACATGGCCTCGTGAGGATAGTGACGATGATAAAGTTGACACCAAATGCCGCATATCAGGCTATCTTCGACAGTTCGTTGCTGATGCAACACCAACTGAACTGACCGACCTGGTCAAATTCTGGACCGGATGGGAGATTCTACCACCGAGTCTCTCTGTAGAAGTGGTCGAGGGCAGATACCCCACAGCCGCCACTTGCTTTGAGACCTTGCACATCCCAGGGCATTACAAGGATTACACATCTTTTAAATGTGACATCCTGGTCTGTATTTGCAGTTGCCATACAGGATTTGACTTGTATTTACTTGATTGTCCCTGCTTGTTAATTCTGTTAAAAGATCTGTTGTAAACTCTCACGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64726 lncRNA downstream 96088 9916578 ~ 9918879 (-) True G48477
TU64729 lncRNA downstream 121141 9892968 ~ 9893826 (-) True G48479
TU64692 lncRNA downstream 229726 9783714 ~ 9785241 (-) False hipk1a
XR_005639087.1 lncRNA downstream 248778 9764068 ~ 9766189 (-) True LOC120558310
TU64671 lncRNA downstream 252518 9760890 ~ 9762449 (-) True G48436
TU64777 lncRNA upstream 7010 10023128 ~ 10023993 (-) True G48522
TU64856 lncRNA upstream 283426 10299544 ~ 10299879 (-) True G48569
TU64912 lncRNA upstream 287333 10303451 ~ 10316636 (-) True G48617
TU64914 lncRNA upstream 297837 10313955 ~ 10375462 (-) False G48617
TU64920 lncRNA upstream 388019 10404137 ~ 10404797 (-) True G48623
XM_039801810.1 mRNA downstream 29834 9978253 ~ 9985133 (-) False mul1b
XM_039801809.1 mRNA downstream 29834 9978253 ~ 9985133 (-) True mul1b
XM_039801489.1 mRNA downstream 81775 9925177 ~ 9933192 (-) True zgc:193690
XM_039800987.1 mRNA downstream 98832 9904308 ~ 9916135 (-) True ints11
XM_039799252.1 mRNA downstream 113309 9890555 ~ 9901658 (-) True LOC120558325
XM_039800013.1 mRNA upstream 78795 10094913 ~ 10109100 (-) True LOC120558779
XM_039800015.1 mRNA upstream 115573 10131691 ~ 10136381 (-) True LOC120558781
XM_039799833.1 mRNA upstream 300701 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800731.1 mRNA upstream 526815 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA upstream 526815 10542933 ~ 10566475 (-) True ptpn22
TU64679 other downstream 290833 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 316860 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1827416 7771936 ~ 8187551 (-) True G47934
TU64778 other upstream 8876 10024994 ~ 10025825 (-) True G48523
TU65038 other upstream 626601 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 1872823 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2110768 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2110768 12126886 ~ 12128425 (-) True G49083

Expression Profile