RNA id: TU64778


Basic Information

Item Value
RNA id TU64778
length 832
RNA type TUCP
GC content 0.46
exon number 1
gene id G48523
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10024994 ~ 10025825 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCTGGTTGCCACTTGTCTCCTGTCCAGAATCTGGTATTGGTGGTTGTGGTAAGGCATCATAAGCTGGCTCTGGTTCCAGGACATCACCATGGGTAAGGCAGACATTGTGTAAGAAGGCACAGGCAGTTACCACCTCTGTGCAGAAGCCAACCTTTACTTCTAAGGCTTTGAAGAGTGTTGCCCTCCAGCGTGCCTTCATCATACCAAAGGCTCGTTCGATAATTGAACGCGCACGTGCATGGCTTTGATTGAAGCGTTCCTCGACCCTTCCTTGAAGTGGCAGTTTGTAGGGTGTGATGATGGTTATGGGAGACTGTATGTAGGGATATCCTCCATCACCAAGAAGAAAAAAGCCAGGTGGGGGGTACTCAGAATTGACATAAAGTGGGCTGTTTTTTAGAACACGGGTATCATGTACAGAGCCAGGAAAACCAACAAAGATGTTGATGAAACGTCCCTGAGAGTCACAGATGGCTTGCATTTGGATAGAATAGAATTGTTTGTAATTAAAATAGTCCTGTTTGTTATGATTTGGAGGCTTAATACGAATATGGCATCCATCTATTGCCCCTACAGCCTTGTCAAATGCTGTATGCCGAGCAAGGCGTCCAAATCGCAGGCCGACTTCTTCAAGTTCATCATGATGTGGATAGCAAATCACTTTACCTGCAATGTCCATAATTTTGTGAGCAATTCTGTGCACCACACGGCACACAGTGGATTTTGGCACAGAGAATGCCCGGGCAGTGACTCTGTAAGACAGTCCATGTGCAAGCCAATACACAAATATTAGGACTTCCAAATAAGATCCCCAGCCATGGTCCTGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64777 lncRNA downstream 1001 10023128 ~ 10023993 (-) True G48522
XR_005639099.1 lncRNA downstream 6640 10014403 ~ 10018354 (-) False LOC120558372
XR_005639098.1 lncRNA downstream 7855 10014403 ~ 10017139 (-) True LOC120558372
TU64766 lncRNA downstream 8876 10014967 ~ 10016118 (-) False LOC120558372
TU64726 lncRNA downstream 106115 9916578 ~ 9918879 (-) True G48477
TU64856 lncRNA upstream 273719 10299544 ~ 10299879 (-) True G48569
TU64912 lncRNA upstream 277626 10303451 ~ 10316636 (-) True G48617
TU64914 lncRNA upstream 288130 10313955 ~ 10375462 (-) False G48617
TU64920 lncRNA upstream 378312 10404137 ~ 10404797 (-) True G48623
TU64942 lncRNA upstream 553251 10579076 ~ 10579364 (-) True G48638
XM_039801810.1 mRNA downstream 39861 9978253 ~ 9985133 (-) False mul1b
XM_039801809.1 mRNA downstream 39861 9978253 ~ 9985133 (-) True mul1b
XM_039801489.1 mRNA downstream 91802 9925177 ~ 9933192 (-) True zgc:193690
XM_039800987.1 mRNA downstream 108859 9904308 ~ 9916135 (-) True ints11
XM_039799252.1 mRNA downstream 123336 9890555 ~ 9901658 (-) True LOC120558325
XM_039800013.1 mRNA upstream 69088 10094913 ~ 10109100 (-) True LOC120558779
XM_039800015.1 mRNA upstream 105866 10131691 ~ 10136381 (-) True LOC120558781
XM_039799833.1 mRNA upstream 290994 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800731.1 mRNA upstream 517108 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA upstream 517108 10542933 ~ 10566475 (-) True ptpn22
TU64679 other downstream 300860 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 326887 9690530 ~ 9698107 (-) False olfml3a
TU64005 other downstream 1837443 7771936 ~ 8187551 (-) True G47934
XR_005639386.1 other downstream 1918799 8106061 ~ 8106195 (-) True LOC120559931
TU64023 other downstream 2138144 7815151 ~ 7886850 (-) True G47937
TU65038 other upstream 616894 10642719 ~ 10654818 (-) True G48697
TU65448 other upstream 1863116 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 2101061 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 2101061 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 2123969 12149794 ~ 12169209 (-) False dnmt3ba

Expression Profile