RNA id: TU65053


Basic Information

Item Value
RNA id TU65053
length 1330
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G48705
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10668960 ~ 10787890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTCAAATGGTAACGCCGTtctgtttttggtttgtttttgcgGTGTAACCGTTATTTTGTTCAAGCATGGGAACAGTGTTTTGACTTACCCAACTAAACGCGAAGAGTACCTGGCTGCTGCTAATCCACAATGGTGAATGTGTGCTGTTCCTGACGGCTACAGCTTCTTGTCGGAAACAGCAtggacagtaaaataaatggacaaaGTGACACCGTTGTTTTCAGCGGAGACCAGCGAAGTCTATTGTCTAATAATTTAACTACACGGCCATGGCTTGGTAGTGTTGCATTTCTGACTCATTTCCtgcttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctccagatttcccaccgtggtcagaaagaacaggggagacactttgtttctgtcATTATGACTCTAGACTCGGCACATGCTAACGCTCGTCCACTCTCACTTCCCCTCACTCTAacacactaacaacacacacacacacacacacacacacacacacacacacacacacacacacacacttcccacacacacacacacacacacacacacacacacacacacacgcacactagtcaaaagctctgcgtggagctgcgcagaaccataaaacggccttttgtgtgttgttatcctaatttctctgttctgtttcaATAGACGGTTTATAACAAAAACGTAGACATTGGGGAACGTTCTGTGAGAGCCTTGTGGAGGCAACCCTATCCCACTGTTTCAGTATTtcaagtacagcccctttaagcCTCTGATATATACAAAATCTCATTCCTTCATAATTGCGGCATGGAAACTCTGCTGTGATGTTGTAAAAAGAAATGGAAGGCATTCCAAACATCAGTTAATGGAATTATGTAGAAGGGGAAAAGTAGTAGTGAGTCAAAGATGGAAATATTGTTGATTTATTGGAGGAGCCGCTTGAAGCACGAGCTAAGGATTGAGATTAATTTGTTGAGGTTTCTGAATCTCGGACTGTTGTTCAGAAAGTCATTTCGGGAGGGGAGGGATGATTTCCCTGTGCAGGAAGAAGTCAAAGAAGTCCTCTTCTCAACCAGCCCTTTTTACTTCTAGTAATGTTGAAGATACAGGACCGTAATGCTTACTACAGAAACAAAACAGCAAAGAAAGGAAAttttaatttgacatttttagacAAATtgtaaaacaacaaacaaacaaaaatacagcCCTGTGAAAGAGAAAGGGTTTTAAGAGAAGTAACACAGGCAGGGGGCAAACATGTAAGTTAACTGCTGCAGATAATACAGAAGGAAGAAAACATTAGTAATACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65034 lncRNA downstream 8210 10641405 ~ 10660750 (-) False G48697
TU64942 lncRNA downstream 89596 10579076 ~ 10579364 (-) True G48638
TU64920 lncRNA downstream 264163 10404137 ~ 10404797 (-) True G48623
TU64914 lncRNA downstream 293498 10313955 ~ 10375462 (-) False G48617
TU64912 lncRNA downstream 352324 10303451 ~ 10316636 (-) True G48617
XR_005639118.1 lncRNA upstream 46996 10834886 ~ 10865045 (-) False LOC120558410
XR_005639117.1 lncRNA upstream 46996 10834886 ~ 10857990 (-) True LOC120558410
XR_005639115.1 lncRNA upstream 46996 10834886 ~ 10857983 (-) False LOC120558410
XR_005639116.1 lncRNA upstream 46996 10834886 ~ 10857980 (-) False LOC120558410
XR_005639114.1 lncRNA upstream 46996 10834886 ~ 10857980 (-) False LOC120558410
XM_039800731.1 mRNA downstream 102485 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA downstream 102485 10542933 ~ 10566475 (-) True ptpn22
XM_039799833.1 mRNA downstream 343749 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800015.1 mRNA downstream 532579 10131691 ~ 10136381 (-) True LOC120558781
XM_039800013.1 mRNA downstream 559860 10094913 ~ 10109100 (-) True LOC120558779
XM_039801697.1 mRNA upstream 79968 10867858 ~ 10906926 (-) False si:dkey-261h17.1
XM_039801699.1 mRNA upstream 79968 10867858 ~ 10906926 (-) True si:dkey-261h17.1
XM_039801698.1 mRNA upstream 79968 10867858 ~ 10895782 (-) False si:dkey-261h17.1
XM_039801696.1 mRNA upstream 79968 10867858 ~ 10891060 (-) False si:dkey-261h17.1
XM_039800088.1 mRNA upstream 121928 10909818 ~ 11127866 (-) True plxna2
TU65038 other downstream 14142 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 643135 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 944826 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 970853 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 2562765 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 1101051 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 1338996 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 1338996 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 1361904 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 1432847 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile