RNA id: XR_005639116.1


Basic Information

Item Value
RNA id XR_005639116.1
length 4361
lncRNA type inter_gene
GC content 0.40
exon number 7
gene id LOC120558410
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 10834886 ~ 10865045 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTGGCttgtttgtgttgctgtgaataTGTCGATGGCCAGTGTTTTTCATTAGAGCAAGGGACAACTCTGGATTCGATAATGGCAGGTTAATGGGAGCTAATGACAGCTAATGACGGAGTAGAAATAGTTTGAAATAGTTTGAACACGGACGACCTGTTGCGAAGAAAGAGGCGCTGTCGGTATAGAGGATTGGCACATCCATCGGTTGTGCTTTGGCCCGACATCAAAACATCAAACCCACTGCAGTCGGCTGACCGATTGATTTGCTGACTGCTTCAGTGGCACAAGATAAAGCAGGTATTACGTTCAACTTCTTGTGAAAGTGAATGGTGCTGCAACGCGTGCTGACATCCCCAGGGAGAGCCTGTTTGCGTTCTTCTGAGTGGTATCTGCAGAACCACTGAACCAGCTACATCAGTCTGATTTTTATACAAATGAAGAATCATCTGATTAAGGGCGGTGACTCAAACTTCTTTTTGGGCATGAGCATGAGCCTAAACCATTCCAGAGTGCATCACATTTGAGGTCTCCCAAGATGCGGTCAAGCTTTCTTGGAACATCATTTTGGTCCACTCAAAAACAAGATTCAAGGGTGTTTTACACCACAGAAGGATGCCTTTTGTCAAGAGTACCCCTCCCCTTGGAAGCTGGTTTCAGATGGTGGCTTAGAGTATTGTCATCGATCTAGCACCATTTGAAATCAGTGTTCTTTGGGTGGGAAGTGTATTTCCCCTGCCAGCAACACGCGGCTGTGACGTGTGACGAGAGGTGTCCCGGAGATAAAGGTATTACTCCCTGAAGAACTACTCGGTGGGCTACAAACCAGCGGTCTGTGGTGATGTTCTGACAGCTCAAGCTCTTTGTCCTCTCTCCAAGGTTGACCGATTTCTTTTGGTGTTCAGAGCTGCTTTTGTTTCTAGCACCATTTGAAATCGGTTACAGTGAAGGACAGATCATCTTATCTTAACCTTGAGGAGGATCTTGCAAGTAAGCTGTGCTCTTTATTTTGCGGATTGTTGATTGACTGTAGTGAaattacaaattaaacaaaagtaCTCTCATCCTGGATCTCTCATTGTTTGCAGCGGagaaagaagtattcagattctttACTTAAGTCAAACTCTGTAGAAAATACTGTTTACATTGTGAGTTATAGTCCTGCAtaattacttaagtaaaagcacattaagtattatcagctaaatgtgttattttgtatgtaaaacTTGAATCTGTACAGTAACGAAGCTGTCAAGTAAATGTAGTCtcgtaaaacataaaatattttacttgaaatgtagtgaagaaaGTATAAAGAAGCATTACATGAAAATACCAGTaggaaagtacaagtaccttagaATTGTACTTGGGTCCTGTACTTGAGTAAGTGCACTCCATCACTGGATGTGTTCTCTTGTGAACTTCATTGAGGCAGGATTTGAACAATATTCTAGTTAAATCCACAAGGTGGCActgttatataaaatattagATGAGTGATGTGCCATCCGACATTTTCTGGGTTTAACCCTGGTGAGGTGACAGTGCTAACCGTGCCGACAGCAccctttaaatgtttaattttcAGCATATATGGATATTAAAGTGAGTATTTGTTCTATTGCTCATACTAAATATATAGCAAAGGTATTGTAGATTACTACTCTATATTATACAGTAGCTCATTCAAGGATATCCACACCTGTAtacaatattaaaggtgcagtaagcaaCGCTGCGCAAAGattatttgaactcaactgccaaacaaaccTACAGAATCTCTGCCCCCCAGATTCATGGACCCACGCGCATTGCCATAGCGACCACTTCTGTTAGGGTCTCTGCTGACTAAACAAAATATGGCTGAGTCGATGTTAGGTTGTGGATTAGCAAACTGTTGCTACTGCTGTAAAGCCAACGAGTTGGTAACAGCCATCACAAACGATAGCAAACTGACGAGGTTAAACTGGCCTACTTAAAACATCAAACGGTGAAACAGCGAAGCTTTTGCCCGTTAGGGCACTTGCCCATAACGACGAAAGCAACCTCCTCATCAGTTTTAATTCCTTTGAAATCACGGAGGTTTCTTCAGAGTTGGAATGCCTCGCCGATGTTAACCAGGCTCTTCCTCCTTTCCCGCTCATACAACTCCTTTTTCAATTTGTATTCTTCGGTCCTTTTGCTCGTTTGCTGTTTCTCAGCCAACTCTTCTCGTTGATAACTCCTGGCCGGCCGCTGCCTCCCTCTCTCGCCCTCTCCCCCAGCCCCCATCACTTACTTGCACACGCCACCTGATGCAGATTGGCTGGAATAGTGTATTAGTTAGTGCTTGTGCGCACCTATGTTTGTTTTGCATTTACACAGCCAGGGCTGTGTAGGaacaccagattttttttttatcagcgcGCACAGAAAATGGAGAGCTAGGTAACCGTGAGGAGATATTCGCTGagtttgacaaaaagtgtattggattaacatTGCTTACTATGCCTATAGTCCTAACAAGAGAACCTTGTATACATATTATTAAGAGTACAATGTGAATGCAACACTgtgggtggctgtggctcaggaggtaAAGCAGGGTTGGTGATTCAATCCCAAGCTCCTCCGTGTTGTATTAGTTAGTTATATTAATTGATTACAAAAGGTAGTGCCATAGTGAAAGCTTGCCTCAAAATAATACAGAACTCTCACTGAGATTTTCCGACACAAATTTTTGTTTAATACGTTTTTTTTCAGATCCCAGTCTATAAATCTGTATGTGCCCTAATACTCTTAAAGTATGCATATTCTTCTTCTGAGTAGCGTGAGGTTTCAACAAATATTAACATGACACTCTGGAAGTCTACAAAACCAATAATTAGGAGAACCAAAAATggttgatttatttttcttgaaCAGGGTAAACTGTTGTGAAGCTAGGCACAAAACAATGCGCCAAACAtggcttattattatttagcatAAACATTAAGCAAAGGTAGGCCTGCAATTAAGCCTTCATTACCAAACATACAACAACTTTTATGTTTCATAATTCTTTCCAATTCGACAGTGTTTTACACCACAGAAGGATGCCTTTTGACAGCAGTGCCCCGCTTGGAAGCCGATTTGAGTTCTGCTCATATATTCTCCATTATAATGGAGAATGACTTTTGTCCTGTACCAAGCTAACGACCAATTTTACTAATTGTGTTTCACTGTGTTCTGCTACCATAATGTTCATGTCATTATTTCTAGATTCAAGGGTGTTTTTTATGCCACAGAAGGATGCCTTTTGTCAAGAGTACCCTCCTTGGAAGCTGGTTTCAGATGGTGGCTTAGAGTATTGTCATCAATCTAGCACCATTTGAAATCAGTGTTCTTGGGGTGGGAAGTATATTTCCCCTGCCAGCAACACGCAGCTGTGACGTGTGACGAGAGGTGTCCCGGAGATAAAGGTATTACTCCCTGAAGAACTACTCGGTGGGCTACAAACCACCGGTCTGTGGTGATGTTCTGACAGCTCAAGCTCTTTGTCCTCTCTCCAAGGTTGACCGATTTCTTTTGGTGTTCAGAGTCTGCTTTTGTTTCTAGCACCATTTGAAATCTGTTACAGTGAAGGACAGATTATCTTTATTTTTGGGACTGTGGACTGACTAAAATTGACAAATAATTACAAATTAACCGAAATACTTTGATACTGGATCTCTGATTGATATCTAGATTGGTGTTTGCAGGGGAGGTAGTATTCAGGTCCTTGACTTAAAGCACACAATGTGACAATGCCACACTGTAGAAAATACTCATTACATTGTGAGTTTAAgtcccatttttttatttaagtaaaagtgcaTACgtattatcagctaaatgtgttttgtatgtaaaactTAATTTGCAAAGTAACAAAACGGTCATAAATGTAGTCGCATAAAAAGTACTCTTTCCCTTTTAAAATATAGCTATGTAAGTATAAAGAAGCATTACAATTACCTTTATAACTGTACTTACTGTAAATATTTGTACTTGTGACTATCAACCACTGGATGTGTGTCTTTCAACTTGATCAAGAGATCATTTGAAACTTTTCAAATCCACAAGGGGGcactataatataaaatattaggGGAATTATTTTTCTCTGTAGCCACAGTTGGTCAATTATGTTTAGAATCGCTATAGACAGTTTccattttaattatttcttaTAACTCTTAAAATATTTAGGATGTCTCAGACCCCAGGCAGGTCACTAGTCAAActttttaaattacatattttatgtCATACTATATTATTACGTTATTTGAATACTGTTCTCTAGTATTATGTTGTAAATAAATGCTTATTTTCCACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65053 lncRNA downstream 46996 10668960 ~ 10787890 (-) False G48705
TU65051 lncRNA downstream 46996 10669148 ~ 10787890 (-) False G48705
TU65069 lncRNA downstream 54720 10691511 ~ 10780166 (-) True G48716
TU65039 lncRNA downstream 100999 10641405 ~ 10733887 (-) False G48697
XR_005639113.1 lncRNA downstream 124503 10709762 ~ 10710383 (-) True LOC120558409
TU65104 lncRNA upstream 291094 11149074 ~ 11149382 (-) True G48749
TU65111 lncRNA upstream 350414 11208394 ~ 11208617 (-) True G48756
TU65116 lncRNA upstream 363017 11220997 ~ 11221479 (-) True G48761
TU65282 lncRNA upstream 580292 11438272 ~ 11438701 (-) True G48891
TU65275 lncRNA upstream 645847 11503827 ~ 11508308 (-) True LOC120558961
XM_039800731.1 mRNA downstream 268411 10542933 ~ 10566475 (-) False ptpn22
XM_039800730.1 mRNA downstream 268411 10542933 ~ 10566475 (-) True ptpn22
XM_039799833.1 mRNA downstream 509675 10316819 ~ 10325211 (-) True si:ch73-206d17.1
XM_039800015.1 mRNA downstream 698505 10131691 ~ 10136381 (-) True LOC120558781
XM_039800013.1 mRNA downstream 725786 10094913 ~ 10109100 (-) True LOC120558779
XM_039801697.1 mRNA upstream 9878 10867858 ~ 10906926 (-) False si:dkey-261h17.1
XM_039801699.1 mRNA upstream 9878 10867858 ~ 10906926 (-) True si:dkey-261h17.1
XM_039801698.1 mRNA upstream 9878 10867858 ~ 10895782 (-) False si:dkey-261h17.1
XM_039801696.1 mRNA upstream 9878 10867858 ~ 10891060 (-) False si:dkey-261h17.1
XM_039800088.1 mRNA upstream 51838 10909818 ~ 11127866 (-) True plxna2
TU65038 other downstream 180068 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 809061 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1110752 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1136779 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 2728691 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 1030961 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 1268906 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 1268906 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 1291814 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 1362757 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile