RNA id: TU65275


Basic Information

Item Value
RNA id TU65275
length 1695
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC120558961
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11503827 ~ 11508337 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCATGAGTGCTGCTGGGAGAAAAAGTATAGCGACTAACTCTATTTCACAGACGCAGTTTCAACAGCCACGCACGCAGCTTACATTTCAAATTGAAGTCCGCAAGTTTGCGTTACTTTTCTCCACCTTGACGTCAGCGAACCAGTTTGGTGTGTGACCCGCTCCGCTGCGCCCAGATTCCGATATGGTGCCCTCGCCAACACTCTCCACACATATGAACACAAATGTGACAGAGGTGGTTATTGTTCTCATCCTGCTGACGGTAGCTGCTTTGGGCTTCCTGCTTTACCGGTATCTCTGCCACAACAAAGGAGACTACAGGACGACAGGGGAGGCGGCTCCGGGGGACGACCCCGATGACGAGTACAATAACCAAGCTGCGAGCGAAAAAAAGGAATACTTCATATGAACCTGGTGAAGACTTACAGAGAGTGAGTGGAGAAAGACAAAATGCTCTGTAAAAGACTAAAAAGGACATAGgacggtttttttttttatgcatctGTTTTGAGGGGAGGAACGCGACTTTCTGCACACAgctgttttatattttgttgtgaAAAAAACCGCAGAGGCGCACAAGCAATACCAAAGATAAGATTGTTACAGTAAGAGTGAGTATTATTGATGAATGAGGAGCGGGTGACCGACAACAGGTGTGGGTTGAGATTAGCAGAGCTAGGCATGAAACAGGTGGTGGGATTTTAGTGTGCCACAGTTACAGGATCAGTTAATACTCAGCAGTAAAATGTAAGACGTTTGTCTGCTACACTATTTATCAGCCAAGTTTTAGGCCTCTAGTATTTGCAATACGCCGTTTTATTCAGacagtttttcctttttattttttttttttttacaccaaacAAAACCTTGTGCAAGACGTGTTGTGAAGCCATTGGGGGAAGTTACTTTTATATTGATATGTCTTTTACAGTTATAGTTTTCCTATGCAATTATTTTATAAgcaagttaaaaaaacaaaacaatgtccTCCTTTTGAATTCAGGACAGCCTAAACATTATTTGTTGTATGTGATTGTTGTTGTACCTGGTTTTGTATTATTTCTTGCCAGACATAGTAACGGATGACTTCCCTATTTGAGACAAATATGGAAGGCAATAAAACTTGATTTTGGACTAGTGCCATTGTACAGTGTGACAGCTTACAGTGGTGTTAGATGCATTTCGAAATAGGCAATGTCAGAAGCCCACAATCTGACTTTGAATGGATGATCAATGCACAAAGAGTTGAAATGTTTTAGAGAACATACAGCACATTGCACTGAGTTTGTTGGACACGACTAGCTCCATCCAATATAATCCCATACAACACAGAATCCCACTATAATGAAGCTTATGTTCAGTATTTGTTGACTTTTAAGAGTCGACTGACAACATATTAAGACACCCCTTCGATACATGACAAACCACAGCTTCAAATGATAACAGAATGTGAATTGCAAATCTGACGGCATCCACAAGAACTGAATTTAATAAACTTCATCAAAGGTGCGATTTATTGTGGGTTGTTGGATTAAAATGCAGTGGCTGCGATAAACTGGCGACTCGGTGTAATGCTAGGTGATTGTGACAAAAATACAGATCCATATTTGACTCAATACCTTTTTTATATCAAAGTGACAATATTTTGGTTATTGATTctttcatacagtatgtatactaAACTAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65282 lncRNA downstream 65126 11438272 ~ 11438701 (-) True G48891
TU65116 lncRNA downstream 282348 11220997 ~ 11221479 (-) True G48761
TU65111 lncRNA downstream 295210 11208394 ~ 11208617 (-) True G48756
TU65104 lncRNA downstream 354445 11149074 ~ 11149382 (-) True G48749
TU65057 lncRNA downstream 645818 10838207 ~ 10858009 (-) False LOC120558410
TU65296 lncRNA upstream 55763 11564071 ~ 11572989 (-) True G48903
TU65276 lncRNA upstream 68231 11576539 ~ 11578988 (-) True G48886
TU65301 lncRNA upstream 91984 11600292 ~ 11600508 (-) True G48907
TU65304 lncRNA upstream 97425 11605733 ~ 11606614 (-) True G48910
TU65307 lncRNA upstream 99662 11607970 ~ 11615709 (-) True G48911
XM_039801528.1 mRNA downstream 5763 11487065 ~ 11498064 (-) False pou6f1
XM_039801527.1 mRNA downstream 5763 11487065 ~ 11498064 (-) True pou6f1
XM_039801530.1 mRNA downstream 5763 11489336 ~ 11498064 (-) False pou6f1
XM_039801531.1 mRNA downstream 5763 11489393 ~ 11498064 (-) False pou6f1
XM_039801529.1 mRNA downstream 6857 11487065 ~ 11496970 (-) False pou6f1
XM_039801861.1 mRNA upstream 2425 11510733 ~ 11518488 (-) True bin2a
XM_039801982.1 mRNA upstream 13013 11521321 ~ 11531078 (-) True racgap1
XM_039799512.1 mRNA upstream 71985 11580293 ~ 11585970 (-) True si:dkey-190g6.2
XM_039799393.1 mRNA upstream 188648 11696956 ~ 11699952 (-) False zgc:56699
XM_039799388.1 mRNA upstream 188648 11696956 ~ 11699934 (-) True zgc:56699
TU65038 other downstream 849009 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1478002 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1779693 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1805720 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3397632 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 380633 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 618578 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 618578 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 641486 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 712429 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile