Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU65282 |
| length | 398 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G48891 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053116.1 |
| NCBI id | CM020913.1 |
| chromosome length | 44101041 |
| location | 11438272 ~ 11438701 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0009056 | catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:1901575 | organic substance catabolic process | biological_process |
| GO:0044248 | cellular catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0046686 | response to cadmium ion | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| id | description |
|---|---|
| ko04145 | Phagosome |
| ko04640 | Hematopoietic cell lineage |
| ko04612 | Antigen processing and presentation |
| ko04672 | Intestinal immune network for IgA production |
| ko05168 | Herpes simplex virus 1 infection |
| ko05150 | Staphylococcus aureus infection |
| ko05310 | Asthma |
| ko05320 | Autoimmune thyroid disease |
| ko05321 | Inflammatory bowel disease |
| ko05330 | Allograft rejection |
| ko05332 | Graft-versus-host disease |
| ko05416 | Viral myocarditis |
| ko04940 | Type I diabetes mellitus |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65116 | lncRNA | downstream | 216793 | 11220997 ~ 11221479 (-) | True | G48761 |
| TU65111 | lncRNA | downstream | 229655 | 11208394 ~ 11208617 (-) | True | G48756 |
| TU65104 | lncRNA | downstream | 288890 | 11149074 ~ 11149382 (-) | True | G48749 |
| TU65057 | lncRNA | downstream | 580263 | 10838207 ~ 10858009 (-) | False | LOC120558410 |
| TU65059 | lncRNA | downstream | 580263 | 10838207 ~ 10858009 (-) | False | LOC120558410 |
| TU65275 | lncRNA | upstream | 65126 | 11503827 ~ 11508308 (-) | True | LOC120558961 |
| TU65296 | lncRNA | upstream | 125370 | 11564071 ~ 11572989 (-) | True | G48903 |
| TU65276 | lncRNA | upstream | 137838 | 11576539 ~ 11578988 (-) | True | G48886 |
| TU65301 | lncRNA | upstream | 161591 | 11600292 ~ 11600508 (-) | True | G48907 |
| TU65304 | lncRNA | upstream | 167032 | 11605733 ~ 11606614 (-) | True | G48910 |
| XM_039799536.1 | mRNA | downstream | 16811 | 11382182 ~ 11421461 (-) | True | itga5 |
| XM_039799552.1 | mRNA | downstream | 78077 | 11348286 ~ 11360195 (-) | False | slc48a1a |
| XM_039799551.1 | mRNA | downstream | 87074 | 11348286 ~ 11351198 (-) | True | slc48a1a |
| XM_039799550.1 | mRNA | downstream | 90025 | 11337607 ~ 11348247 (-) | True | LOC120558517 |
| XM_039800090.1 | mRNA | downstream | 308962 | 10968009 ~ 11129310 (-) | False | plxna2 |
| XM_039800856.1 | mRNA | upstream | 17042 | 11455743 ~ 11464126 (-) | True | csrnp2 |
| XM_039800857.1 | mRNA | upstream | 25797 | 11464498 ~ 11477916 (-) | True | tfcp2 |
| XM_039801528.1 | mRNA | upstream | 48364 | 11487065 ~ 11498064 (-) | False | pou6f1 |
| XM_039801527.1 | mRNA | upstream | 48364 | 11487065 ~ 11498064 (-) | True | pou6f1 |
| XM_039801529.1 | mRNA | upstream | 48364 | 11487065 ~ 11496970 (-) | False | pou6f1 |
| TU65038 | other | downstream | 783454 | 10642719 ~ 10654818 (-) | True | G48697 |
| TU64778 | other | downstream | 1412447 | 10024994 ~ 10025825 (-) | True | G48523 |
| TU64679 | other | downstream | 1714138 | 9708331 ~ 9724134 (-) | False | olfml3a |
| TU64676 | other | downstream | 1740165 | 9690530 ~ 9698107 (-) | False | olfml3a |
| XR_005639386.1 | other | downstream | 3332077 | 8106061 ~ 8106195 (-) | True | LOC120559931 |
| TU65448 | other | upstream | 450240 | 11888941 ~ 11891046 (-) | False | srxn1 |
| TU65528 | other | upstream | 688185 | 12126886 ~ 12128425 (-) | False | G49083 |
| TU65529 | other | upstream | 688185 | 12126886 ~ 12128425 (-) | True | G49083 |
| XR_005639172.1 | other | upstream | 711093 | 12149794 ~ 12169209 (-) | False | dnmt3ba |
| TU65587 | other | upstream | 782036 | 12220737 ~ 12223002 (-) | False | ppdpfa |
