RNA id: TU65301



Basic Information


Item Value
RNA id TU65301
length 217
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G48907
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11600292 ~ 11600508 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTAAGCAGCCCAGTGAAATGGGGTATATTGTTTGTTGTCCAGCAGTTTATCGTGTGGGTCTGTTGCCATGGCGGCCTGGACCAGACTGGCCAGGATGTCCGTGTGGCCTCTGGATGCAGCATAGTGCAGCGGTGTCCTACCCTGGATGTCCCGACACAGTGCAGAAGCTTTGTGCTCCAGCAGGGCTGTCACGCAGTCATCATGGCCCAACACCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65276 lncRNA downstream 21304 11576539 ~ 11578988 (-) True G48886
TU65296 lncRNA downstream 27303 11564071 ~ 11572989 (-) True G48903
TU65275 lncRNA downstream 91984 11503827 ~ 11508308 (-) True LOC120558961
TU65282 lncRNA downstream 161591 11438272 ~ 11438701 (-) True G48891
TU65116 lncRNA downstream 378813 11220997 ~ 11221479 (-) True G48761
TU65304 lncRNA upstream 5225 11605733 ~ 11606614 (-) True G48910
TU65307 lncRNA upstream 7462 11607970 ~ 11615709 (-) True G48911
TU65449 lncRNA upstream 285457 11885965 ~ 11891046 (-) True srxn1
TU65457 lncRNA upstream 358871 11959379 ~ 11979035 (-) False peds1
TU65465 lncRNA upstream 402759 12003267 ~ 12063255 (-) True G49024
XM_039799512.1 mRNA downstream 14322 11580293 ~ 11585970 (-) True si:dkey-190g6.2
XM_039801982.1 mRNA downstream 69214 11521321 ~ 11531078 (-) True racgap1
XM_039801861.1 mRNA downstream 81804 11510733 ~ 11518488 (-) True bin2a
XM_039800359.1 mRNA downstream 91955 11504368 ~ 11508337 (-) False LOC120558961
XM_039801530.1 mRNA downstream 102228 11489336 ~ 11498064 (-) False pou6f1
XM_039799393.1 mRNA upstream 96448 11696956 ~ 11699952 (-) False zgc:56699
XM_039799388.1 mRNA upstream 96448 11696956 ~ 11699934 (-) True zgc:56699
XM_039799389.1 mRNA upstream 96448 11696956 ~ 11699927 (-) False zgc:56699
XM_039799390.1 mRNA upstream 96448 11696956 ~ 11699764 (-) False zgc:56699
XM_039799392.1 mRNA upstream 96448 11696956 ~ 11699762 (-) False zgc:56699
TU65038 other downstream 945474 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1574467 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 1876158 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 1902185 9690530 ~ 9698107 (-) False olfml3a
XR_005639386.1 other downstream 3494097 8106061 ~ 8106195 (-) True LOC120559931
TU65448 other upstream 288433 11888941 ~ 11891046 (-) False srxn1
TU65528 other upstream 526378 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 526378 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 549286 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 620229 12220737 ~ 12223002 (-) False ppdpfa

Expression Profile