RNA id: TU65457


Basic Information

Item Value
RNA id TU65457
length 1805
lncRNA type sense_over
GC content 0.37
exon number 2
gene id peds1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11959379 ~ 11979035 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttaatatgggTGATGACAATATTTAATAGTTTAGTCATGAATTTATCAATCTGAGACAATGACTACAGTTGCAGTGGAAGAGTCAATGCTACTATCATCCCTCCAGAATGCTAAATGACAGATCTGACCGCTCAGAGACGGGTTTAGTTTAGACAAACCAAAAACAAGCCAAATTGCTCATATTGCTGTTGGATTCTAAGCTTGCATTTTGATTGGAATTTGTCATGTTATCTGACCATTGAAACAGTttgcatttatatatttgatgaTAGTGGATACACAGAAGATGAGTAATTTGATCTAAAAAAGTGACATTGACGTGTGTAACTGTAGTCAGCGTTGATGCTTGGCCATTAGAAAATCTGGGCAAATACACATGTATCATGCTGTTGTTTCGCTGAGTCACTCCGGCCCGACTAACTAGTCTTTTCAGATGATCATGTCTTCTGTCAAAAgcctttttagtttgtttttttttagacctttttatttgtataggacagcttagacttgaaaggggggggggagagaaggggaatgacatgtggcaaagggccgcaggtcgtaCGTGAACCCGTGTTGagaagtaaacctctatacatgggcgcccgctctaccaggtgagctaaccaggcgctcaccttttaagtttttatttgacTCCTGATGAACAGACAGTTTGGCAGGAAAGAGGCAAATGGATTTTGGTCAAGCTGCCTTACGTACGGACTACAGATGCAGtacttttgtcttcttttttttgttaatttgtgtCATTTGCTGCACTTCTTTGTGTCGCTGCAACGTTAATTCTGTCTTTCTGGGATTTGTGTCTCAGTTAATTAGATACAGATACTCTGAAGTTATGTGCCAACAGTCCAGGAAGGAAGGCTCCAGATGAGATTATgtaattgattgattggttgaaagtttttttaatgtaatttgtaaatgtattGTACAGCCAATAACTATGCAGTGTAATAAGAGGCCCTTAACCATACGTCTTAACTCCTCTGATTAGGTTAAAATGCCTTTCTTTTTCTActagtttgacacatatttgcTATTTTAAGTTGGAAAACCGGAGCTTAAAACAATTGGCTACTTAAACCGCATGACTAAATTACTTCTACTAATTAAGCTGTGACTTACACAGACGTAagaatgcatgcatgcatacagcATGAAAGTAATTGTGCTGCTTTCAAAAGATGACCCCAAATTTTGACCAAATATTCCCAGATTTGAACTTTGAAAATGTTCTCTAATAAATCCTAGATTTTCAGGTGTAAATTGAAGGAGCTAATCTTGCTGTTCAGCTGGGTTGATCAGGTTAAAGGTTGAATTAGTGAGCTTCTGATGTTGTACTAGACAATGTATTGatagtatatatttttattaaagtaaaagttcCTTTTTGAAGCCAAAATTATGCTTTATATGATGTAATATTTCAGCTTTTGAATCCTTCATACTTGATTATATACAATTATTCGCCATAGGTCAGCAGCAGAAGTACACTGCAGATTGTGTAGTGCTTGTAGAGTATTGTGAGAAGCCGTCTCGTATGCGATAGGTAGTGTAATACATGATGGTAAATAGATGCCACTATGTGTCACTGCGTCAAAGTTTAAGGCCTGTGTAGAAGTTCTACTCCTGAAGTTCATTTTGATCAGTTTTAGGCAAAATATAGTTTGGACACTGCTAACTTTAAACAACTTATTTTATGAATGGGAGTTTCTGCGTTGTTGGCCCTGTtggatgattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65449 lncRNA downstream 68333 11885965 ~ 11891046 (-) True srxn1
TU65307 lncRNA downstream 343670 11607970 ~ 11615709 (-) True G48911
TU65304 lncRNA downstream 352765 11605733 ~ 11606614 (-) True G48910
TU65301 lncRNA downstream 358871 11600292 ~ 11600508 (-) True G48907
TU65276 lncRNA downstream 380391 11576539 ~ 11578988 (-) True G48886
TU65465 lncRNA upstream 24232 12003267 ~ 12063255 (-) True G49024
TU65530 lncRNA upstream 140623 12119658 ~ 12121550 (-) True G49084
TU65531 lncRNA upstream 140717 12119752 ~ 12121550 (-) False G49084
TU65542 lncRNA upstream 161900 12140935 ~ 12141414 (-) True G49092
TU65570 lncRNA upstream 167693 12146728 ~ 12147033 (-) True G49112
XM_039800849.1 mRNA downstream 1988 11953175 ~ 11957391 (-) False LOC120559253
XM_039800848.1 mRNA downstream 1988 11953175 ~ 11957391 (-) True LOC120559253
XM_039800850.1 mRNA downstream 2865 11953175 ~ 11956514 (-) False LOC120559253
XM_039800835.1 mRNA downstream 13869 11940260 ~ 11945510 (-) True slc52a3
XM_039801638.1 mRNA downstream 51766 11898818 ~ 11907613 (-) True scrt2
XM_039800845.1 mRNA upstream 7375 11986410 ~ 11999445 (-) True LOC120559249
XM_039801026.1 mRNA upstream 124856 12103891 ~ 12119146 (-) True LOC120559362
XM_039799911.1 mRNA upstream 168379 12147414 ~ 12169209 (-) False dnmt3ba
XM_039799913.1 mRNA upstream 168379 12147414 ~ 12169209 (-) False dnmt3ba
XM_039799910.1 mRNA upstream 168379 12147414 ~ 12169209 (-) True dnmt3ba
TU65448 other downstream 68333 11888941 ~ 11891046 (-) False srxn1
TU65038 other downstream 1304561 10642719 ~ 10654818 (-) True G48697
TU64778 other downstream 1933554 10024994 ~ 10025825 (-) True G48523
TU64679 other downstream 2235245 9708331 ~ 9724134 (-) False olfml3a
TU64676 other downstream 2261272 9690530 ~ 9698107 (-) False olfml3a
TU65528 other upstream 147851 12126886 ~ 12128425 (-) False G49083
TU65529 other upstream 147851 12126886 ~ 12128425 (-) True G49083
XR_005639172.1 other upstream 170759 12149794 ~ 12169209 (-) False dnmt3ba
TU65587 other upstream 241702 12220737 ~ 12223002 (-) False ppdpfa
TU65659 other upstream 409946 12388981 ~ 12391671 (-) True fkbp1aa

Expression Profile