RNA id: TU65652



Basic Information


Item Value
RNA id TU65652
length 226
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G49177
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12375337 ~ 12375562 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCCTTTATCTGTGGAGTTGCTACAGTGGTACACGGCTGTGTAAAGAGTTTGTCTGCACTTCCGCTCTCCTTCCACTGCATGAGCTGCAAGGTTGGTGGGGCCATGTCCAATGGGGCAACCAGATCTGAATAGTCAGAAAGCTGCTCTCTGATGAAGTCATTGGTCAGCTCTTTAGACTGGTCCACAACCAACCTGCGTTTCCTCtttcccctctttttctctGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65653 lncRNA downstream 2029 12371821 ~ 12373308 (-) True G49178
XR_005639120.1 lncRNA downstream 6629 12351427 ~ 12368708 (-) True LOC120558423
TU65579 lncRNA downstream 130504 12243202 ~ 12244833 (-) True G49115
TU65582 lncRNA downstream 161796 12211743 ~ 12213541 (-) True G49118
TU65583 lncRNA downstream 161796 12211743 ~ 12213541 (-) False G49118
TU65654 lncRNA upstream 726 12376288 ~ 12376976 (-) True G49179
TU65655 lncRNA upstream 1417 12376979 ~ 12380785 (-) True G49180
TU65658 lncRNA upstream 7940 12383502 ~ 12387224 (-) True G49183
TU65777 lncRNA upstream 229318 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 284486 12660048 ~ 12661240 (-) False LOC120558434
XM_039799418.1 mRNA downstream 43345 12323485 ~ 12331992 (-) True samd10a
XM_039799415.1 mRNA downstream 51996 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 55511 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 55511 12306258 ~ 12319826 (-) True uckl1a
XM_039799384.1 mRNA downstream 95300 12271487 ~ 12280037 (-) True nkain5
XM_039799419.1 mRNA upstream 13441 12389003 ~ 12391677 (-) False fkbp1aa
XM_039800420.1 mRNA upstream 16693 12392255 ~ 12410148 (-) True mfsd2al2
XM_039801994.1 mRNA upstream 36659 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 36659 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 36659 12412221 ~ 12415046 (-) True fam110a
TU65587 other downstream 152335 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 206128 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 246912 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 246912 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 484291 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 13419 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 44224 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 876850 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1764818 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2156562 14532124 ~ 14534605 (-) True G49766

Expression Profile