RNA id: TU65653


Basic Information

Item Value
RNA id TU65653
length 1488
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G49178
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12371821 ~ 12373308 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACGACATCTATGTTACTGGTGTCCCAGTATGAAGAGAACAGTGTGAACAATTATGGTCATTTAAGAAGAACAAAAAGTTTCTGTGAATGAACCTGTGCTTATTAAAGTGCCAAGTCTTgggcagaggtgggtagtaacgagttacatttactgcgttacatttacttgagtaagtttttgaaaaaattatacttccaggagtagttttaaatcactatactttttacttttacttgagtagatttgtgaagaagaaactgtactcttactccgctacattaggctacaatgaggtcgttacttttcttttgacctctttggtattctacgtgtcattgtttttatcccccgcgttcgcctcattttaatgttttattttgacagagagagagacttccgctaaaggctctatcacgtggctgtgtttcaccaatcaaacgtagttgtgcagtctcgtcacgtgaccatactcaatctcatcggcgggacgggttagctttacagtcgcagcaaaacaaaaatgacaatgtcagaatcaaccatcggcaatgcagacacagatgaggaggaacaccccagaggccagatcaacatgtcctggatttatttcagttacccggcttcacctaacctaacaaccgcggtcccgcaacTGTGTCACGACCACTGACATATataacggtggttaacaactagttcagtcaacccagggtttcccaatctagcggCGCGTGTTtacataaaagaggcgatgtttgcacaacatgaccaatagccacatattttacataagaagagcaaactataattctacataaatatgaagaacacagacacggttttacagacaaaaacgcaatacagtcgctgcttcctaaaacaggaggacagctggcaaaaaaataaataaataggcgacgctgtagatgcgtaggctagcctacatcacaacgattatcaatatcacttccccatcagtcaggcacaacatctgaccataattacacttgtgctttccataaactgccgttgctttagcctattatttcagttgcaaccctggcagtggaagcgatcgtgagagaaaataaaaaatataaaaaacataattcaaaccgctgtgcgcattggtgacacacggctcaagaagccgacaaatagccgctatgtaattccctcccattaaaatctatatatttcataaatatacccatcagggaatgttaacggggttgtcggtctctaaatgttttttgtatgagcgcacctctctctctctctctctcgccccgagctccgcctgatcttctaagaacggtgacgccgttatcaatcgagtattgattggtcagtatgcggtgcttttacaccggttgatctctgatctccaacataacctgctccctaccagaaaaccaaatcttgcttcgtagtccaggcctctggcctcataatgaaagcatgtttaccttagtaaaagtgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639120.1 lncRNA downstream 3113 12351427 ~ 12368708 (-) True LOC120558423
TU65579 lncRNA downstream 126988 12243202 ~ 12244833 (-) True G49115
TU65582 lncRNA downstream 158280 12211743 ~ 12213541 (-) True G49118
TU65583 lncRNA downstream 158280 12211743 ~ 12213541 (-) False G49118
TU65570 lncRNA downstream 224788 12146728 ~ 12147033 (-) True G49112
TU65652 lncRNA upstream 2029 12375337 ~ 12375562 (-) True G49177
TU65654 lncRNA upstream 2980 12376288 ~ 12376976 (-) True G49179
TU65655 lncRNA upstream 3671 12376979 ~ 12380785 (-) True G49180
TU65658 lncRNA upstream 10194 12383502 ~ 12387224 (-) True G49183
TU65777 lncRNA upstream 231572 12604880 ~ 12661240 (-) True LOC120558434
XM_039799418.1 mRNA downstream 39829 12323485 ~ 12331992 (-) True samd10a
XM_039799415.1 mRNA downstream 48480 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 51995 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 51995 12306258 ~ 12319826 (-) True uckl1a
XM_039799384.1 mRNA downstream 91784 12271487 ~ 12280037 (-) True nkain5
XM_039799419.1 mRNA upstream 15695 12389003 ~ 12391677 (-) False fkbp1aa
XM_039800420.1 mRNA upstream 18947 12392255 ~ 12410148 (-) True mfsd2al2
XM_039801994.1 mRNA upstream 38913 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 38913 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 38913 12412221 ~ 12415046 (-) True fam110a
TU65587 other downstream 148819 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 202612 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 243396 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 243396 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 480775 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 15673 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 46478 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 879104 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1767072 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2158816 14532124 ~ 14534605 (-) True G49766

Expression Profile