RNA id: TU65655


Basic Information

Item Value
RNA id TU65655
length 3323
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G49180
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12376979 ~ 12380785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAAACTGTAAATTCAAGACATTTTATATAATGAACTCCCAAGAACGAGTGGGAAGTCCAGTTTTGTAAAGCCATTCTTGTGTCTTCTAAGTATATGGTCTCTATTAATGGCCATCTCCTACTATCATGTGTGctaaaagaaaattattttgCTGCCCCCAAATGTGTGATGTCAGGCCTGCAATGAgcagaaaataaaatggatgaCATACAAACTGAGAAGTTGTAGGCTGAAAAATATAAACTTAATTTGCGTCTATTAATACTGTATAATTTAACATCAGTCATCCCATTTGTTGCTAAGGGTACAGCTCAGTGCTGTACAGAAGTAAGTACTCTGTTTTATGGATATGGatattgaatatattttgaCCGCGAGAATAAAAGAATTGAATATATGAATTGACTTTCATATCCCAAACTTTAGTAACATCAAATTCAAACTTGTTAATGCTATACAAATGTATCCAAATCGAGAAAACATGTATATGTGCAGTGAAACAGGGAACAATGTTAAATAGATATAAATAATACCTGTACTTTAGAGCAAtacttttttgcaacatttgCTTATAATGAAATGTCCATTTTGCACAACAAGGGTTCAAGTGACACCTGGTGCATAGCAGGTCTTACATACATACTTAAAAACCCTTGGTTATAATAAATAGAAGAGGAACTGGTGTAAATCACTAACTGAACATGCCGGAAATTTCAGTCCTAAAAGATCCCAAGAATAACTTTAATGCCATATGTTACTGAccactaaaaaataaatactcaattatttaaaatattttagtaTGTCAGATACTGTAGGATGCCACAGGCCTAATAAAAACAGTCTGGCAAAGAGTCTTAGAGAAGTTGAGTGATTCATTGATACTTTCCCAATTTCTTACTAAAGAAAAGTGcagagaacaaaacaaaatatttacaagtCTTAAGACACACACGTAtactaatgtgtgtgtgacacacagTATAATATAAAGTTAGATCTTTCTTTCAAGCTGTTTTTACCATTCCGCCCAGAAACCTATTTGAGTAAATACAATTTTACCCTGGGAACCTGACATAGCAACGCAAACATGTGACACTTGTGCATGAGGCAGATCGAGTAGAACCAGAACTGCATCTCTGTTTTGTAAAGAAactgttttctgttttactaATTGTAGAACTTCGGTCCAGGAGTAAGAAGGATGTCCTCATAGGGTGCTCTCTGGCTCAGATGAAGGGCTTCTTGTTTTTTCAGGACCAGAAGACAGAAGAAAGTGGTTGCAGCCTGCAAGCGAGTGCTTCCTTCACAGAGTGCCTCCAGGCTAAACGTGGTAACACTGTTGCTCTGGCTCTGCCGGGgacacggacacacacggacacacacggacacacacacacaatttaatttCCCAACATCATCCCTAATCCTGCCCCAGCCTTCTCACCTTTAAATCCCTGCCCACTGTGACTATAGATTTGTATCTGCCTTGGGGGAAAGAGACTGCCTAACATTGAAACAACAGCCCTGTGTCATCAACATACAGGCTTTACACATATAGAAAATGTAAGATGCGGTAGGTTTAGCTGTCATTCTAATACctgaacatttatttttaggTCCTTACTTTTAGTGTGTTCAGAAGCTTCTGTGTACGCCTGCTGATCCtcctctcctcaaagtcctggCTGTCGAGCATAGACTGCAGATTAGAAAAGGACCATATTTCAGTCAGGGATGCCAGGAACATCTCCAAGGCAGCATGGGAAATTAACACACACCATCTGGCAAACGCTAATACATTTGTAGTTTGTTTACAGTACCAGccattttttttcccagatAACAATCCATTATTTGTTCACTTTCAATGATAAAGCCAGTGAAATCTGGAGGCCGACAGGGTCTAATTCCCTGCCCTGGTTCTatttgtaactgtgtgtgttccaaggttattatagttttgcatttttcattagtttttgtttttatttcgttttgactttttgttttcaaattcagtttagttttaattagtttttaaagcgggtttgctagtttagtttacattttttgaaaatgcttagttttagtttagtttcagttttctttttttgtaatatgggttatttgacaggggcaagattcaaaaaggtcagaaaaagtattgtgtaataataactcaaaaacatcataccattttagaaatatgtaggctattcacaatgtattcaacaataacacccgTAAGTTacataaaatgtagcctacatttgattagcacaaatatgtaaacagcctacacaagacgccgctgtaagtgcaaaatgtgtaagtgacgtgtgccaggaaaaaacctaaatagccaacagactaaagaagacatactgtacatgatgTTTTGTTGTtacaggtgttttgaactttggttcgagTAAAGTGGTGAAatttttgaagtcaatcgagtcacacagttgtgtagacTTCCCAGTATCAATCAACATATTAACCCACGCGTCCTTCGTCCTCGCTTTTAGCGTTCCTGCGTATTTACTAACCTGTggtgttctctgtcctgcggttgtctccgtcatgctgcctggccctgtAGCCATACATCCACGCCCTGTaccggggttagcttctgtttcagggaaagggggctttgcgttctcctttaccttgtCAAGGCACCTGAGTGTGGAGGGAAGTTGACTGAGTCTCCTGCTGTATGCAAGACGGATGGACAAACATGGAGTCTTCTGATGGAAGTTCTGGATGGGTGAACTCCGACTCGTTTTCatcctgacagacacacagcacagatTATAGATCGAAGATTAAAAGGTGAAAAAGTATCATAAATGAGAATTAAATCCTTCTCATCACACGGCATGCTAATGCTTACTTGTGCCAGCTCTGAGTAATTCCCACGTTGATTGTCATTTATGTGATCAGGGTCTGTCAGCTCAGTGTTGTGGGTTCTTTCTGGATCTATTGATGAATCTACGATACTGACGCTGTCTGTGGTGAGGGCGCTTATGTCCCTCTGAACTATACAACACATAAAGCAGATTACATGTAACTATAGCATGACAGGAGATGCAGAACAGAGAACACAAAattcatgttgttgttttttgtcatttgatCATACACCAAACAGTCCAGGCACATAGGAATTCTTGTGCAGGCTCTTTAAGTCAAGTAAAAAGAGTTAAGGCCAAAGAAAAGCACACCGACTAAAATAGAAAAAGGTAATACAAgatgaataaattaaaataagaccaaaacaaattgaAATACTGTACAAAAGAGtgc

Function

GO:

id name namespace
GO:0030983 mismatched DNA binding molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65654 lncRNA downstream 3 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 1417 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 3671 12371821 ~ 12373308 (-) True G49178
XR_005639120.1 lncRNA downstream 8271 12351427 ~ 12368708 (-) True LOC120558423
TU65579 lncRNA downstream 132146 12243202 ~ 12244833 (-) True G49115
TU65658 lncRNA upstream 2717 12383502 ~ 12387224 (-) True G49183
TU65777 lncRNA upstream 224095 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 279263 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 279667 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 319644 12700429 ~ 12704105 (-) True G49307
XM_039799418.1 mRNA downstream 44987 12323485 ~ 12331992 (-) True samd10a
XM_039799415.1 mRNA downstream 53638 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 57153 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 57153 12306258 ~ 12319826 (-) True uckl1a
XM_039799384.1 mRNA downstream 96942 12271487 ~ 12280037 (-) True nkain5
XM_039799419.1 mRNA upstream 8218 12389003 ~ 12391677 (-) False fkbp1aa
XM_039800420.1 mRNA upstream 11470 12392255 ~ 12410148 (-) True mfsd2al2
XM_039801994.1 mRNA upstream 31436 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 31436 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 31436 12412221 ~ 12415046 (-) True fam110a
TU65587 other downstream 153977 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 207770 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 248554 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 248554 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 485933 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 8196 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 39001 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 871627 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1759595 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2151339 14532124 ~ 14534605 (-) True G49766

Expression Profile