RNA id: TU65658


Basic Information

Item Value
RNA id TU65658
length 3480
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G49183
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12383502 ~ 12387224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcatattttattttccaagAAGAGAGGAAATACCCAGGGTATTTGGCAATATTCTGTTTCTTGTGGAATTTAAGTACAGTTAATTGCCATTTCATTGCTTTTGCATGTACGGTACAAGGTGATGGGAGGTCTAGTTTCACATGGAGAAGGATAAGTGACATCGAGCAATTTAGAACGTGAAGGAAATGTAGTTGCACTGGAACCAAAGTCTAACAAATTTAAAATAGTGAGAAGTTCAAACAATATGGCATGCTCCAACCATAGATACgttatagtttttattttccattgaagTTTGAATTTGACAGCTATTCTTCTGCCTTAAGCTTAATCATTGATTAAACAACCAGCAAAACCTCGTTGGAAAGTTCCCTGAAAGCTTTTTTGCATAAAAAGGCTGACATCGGTAACCACACATACTTCACATCATAGTTTACAATCGAGCCATTTCGGTTGAAACACAAAAAGTCAACTTGTAAGGTGAGTATTCACAACTATGATACATACACTACATTATTATAAACTGCAATACAGTGCTGTGAAAACAACCTACACTGACACAAAGTGTCTTTACTTGCAGCTGCACAAAGATAATTTAAAATTAGAAAATATATCCCTGTATCAAAAAAGTTATTTCTTCATAAAGTCCGTAAACAAAACAGCTCATCGCGTCCTTCATTCAGCTGTGTGGATCACAATCTACTGTATGCTCTTATCTCCTATAAGCTTTATAGAATTATGTAACTGTAGATACACGACCAGATGAGGCATTTCAGGACTGGAGCAGTGGAACTCATGTGCATATGAATGCCCTGCTCACACACCCGCCTCTAGGCtttatttttgattttctttattttcaggttcattgaTACATAATAGATTTTAGCAAGCAAAGAAAATAATGTTGAGGGTAAATGTCCCGACAGGAAGAAAAAGAGTCTGCACAGTTTTAAACTCCCACGTTTTGTTTATTGGCAAAAATATCAATAACCTGTCTGTTCTGCACCTGAGAACTAGATTTAATGCACATGCTTTTCAAAAGGTAAAAGTCCCAACAGCTTTCAACCACAGTCGATATTTTCATGTGTGTAAAAAACTTTGCTGCCTACACTCACTGTGCTCTTTAAATCTATGAACTACTTCAGAACAAGTCAGACGTACTGactgtaatttatttttctgatttttgcggaacattttcatttcatatttcattAATGTGACTCTCCCTTTCCCTTTTAAccaatttcttttaaaaatgtgatgATAAAAATAGAGGAACATTTAACTTGAGACAATTCTCTTTTGCTTCTTTTCATAACATTTAGTGAATATCTTTGCCCAGAGGATATCATCTAAATCCTGGTAGGGGATTTTAATTCAAGCAAGAGAACCCAACCAAACTGTGGGTTACATGCAAATTCCAATAAAGAGACAACCACTTAATCTGCAGGCAGTAGCAGTAAGTGTATTTGAGTAATGAAATAATGGACAACTAATCCTTTGTTTTCTAAGGCAAGGCATGACCACAAAATCACAAGGGCATTATGTAAAACCTAGAAATCTTATAAGAGATATCCAACACACGGCATAGCCAAACTGTAATAAAGTCAGCATTGCTGTGGCTGTGCCTGCAGAGGTTGGGAGTTGTAATCTTTATGTCAGAGAGAGCAAGAAAGTCTTAGATCGGCGTTGTTCCATTCATGCTGATAGGCCTGCGTCCTCTGCCTGCACCCCGGCGGCGCAGCGAGTGAAGAGCCACAGCACAGCAACCTCTCAGCAGGGAGCCAATATGATACACCGGCATGACTTCCCGTGGCCCCCCTCGACACAGCCACGCCATGGTTGGCACCACTGGCATCGCCAACGCCAACAGATCTACGAGGAAGTACCGGCTCCAGTGGCAGAGCTGAGGGGAATACCCATCTTCATTTGTACCTTCGGCTTCATCCTCATGGTCCTCTTCTATCTCCACTACTACAGCGTCCTGCCTCTCTGGGAGTGGAGCTATAGGGTGGGGTTGGCAGCTGTGGGGCTCTCCTGGCATCTTTGTTACCTCCTCTGGTCTGTCGGGTGGTAGTGGCTCTACGCCGTAGGAATGCTCAGGAGGGAACGCAGCAGGTAAAGACGATGGAAAGCGATGGGGTTCTGAAGGGGTGATGTCTGCTGTGGCTAAAGAAATGATACTCAGCTCTTGGACACCGCTTTCCTCACACAGCCAGGTCATGGTCGGGCTGCAGGCCTGGGAGCGCACCTCTGGCTTCTTCTCCGCTGCAGGAGAAGGAGTAGGGATGGGCTTGGTAGCAGGGACAGCTGCAGTTGCAGTTGTTACTGGGGCCTCCTCCTGAGGTAAATGCAGGAACAAGTGATGGTGGGGGGGGTAGGTGTGGCCACTGCACTTGCAGCTGCTACTGAGACTGTGGCAGGAGTGTGAGATCGGCAACACCGCTCCCCCACTGCACAGCCTTTCGTAGGTGGAAGAGCGTGGCACAGCTGGGGGGCCTCGGATGCGGGTTTGTGGGGGCAGCTGCTCTGATAGGAGGGCCGCCTCCAGGAGCAGGTGGGTTTGTCCCGCCGGGCGAGACTCTCTGCTTGACTCGGGAGCGTTCGAGCTGCGCTCCAAATGCAGAGCCTCGCTGCTCAGTCGGGTGTGGGTGGTGCTGCTGCGACTCAAAGTGCTGGCTGGGGAACAACCACAGGAGCGAGACCTCCCCCCTGGCCGAGCTCCCTGCAACCCTGAGTATGGCTTGTGCGTGTCATGGGGGTCTTGTTCGCGGACACTCAGGTTGGACCTCACTGTCTCAACCACCTCCTGAAGGTGCTGGATCTCCTTGCGAGCCTCTTTCAGGGCTAACTGGGCCTCCACACGGTGACATTCCTCCTCTATCCAGTCTTCCTGCATCCTGTACAGTTGGCTCCTCAACTCATCTATTTCACAGTCTCTGTGTTGTAGTCTTTCCACATTGTCCCTCAGTCTGGCTCGCAGATGTCGTATACACACCTCCTTCTGTTGCAGAGGGGTAAGGTACTGCTCCGGGGTCGGGGGCCTGATCCCATGGTTGTCACTGCATGCTGTGTGCTTTGCCTGACGCCTGGGTGTACTAGGATGCGTCCGGGCTGTGGGGCTGCCCTCCGCTGCCCTAACCCGACCGGGATAGGTGTGGATACTGGATGCATCACTGTGGGAACATCGCACGCTGCCGCCGCCACCAGTGCCCACTGAGCGCCTTGAAGGTAGAGATAACATTAAACTTATTTACAATACAGTGAGAAGTCCCAAAATCAAAAATGTCCGATCTTTGGCATCATTCTGAAACTACAGGTGTGTGAGAAGGACGTAACGGTACCTGCGCTGACCTGAGGAGGGCTTTCGACTCGGAGTGAGAGACATTGATGTGCAAGGGACCTCCGATCTTTCCACAGCTGTCTCTAGATAGGGACGCTAGGAGCCCTCACAGCTGCAGCGTAAGAGCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65655 lncRNA downstream 2717 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 6526 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 7940 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 10194 12371821 ~ 12373308 (-) True G49178
XR_005639120.1 lncRNA downstream 14794 12351427 ~ 12368708 (-) True LOC120558423
TU65777 lncRNA upstream 217656 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 272824 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 273228 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 313205 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 381596 12768820 ~ 12771419 (-) True G49372
XM_039799418.1 mRNA downstream 51510 12323485 ~ 12331992 (-) True samd10a
XM_039799415.1 mRNA downstream 60161 12306258 ~ 12323341 (-) False uckl1a
XM_039799414.1 mRNA downstream 63676 12306258 ~ 12319826 (-) False uckl1a
XM_039799413.1 mRNA downstream 63676 12306258 ~ 12319826 (-) True uckl1a
XM_039799384.1 mRNA downstream 103465 12271487 ~ 12280037 (-) True nkain5
XM_039799419.1 mRNA upstream 1779 12389003 ~ 12391677 (-) False fkbp1aa
XM_039800420.1 mRNA upstream 5031 12392255 ~ 12410148 (-) True mfsd2al2
XM_039801994.1 mRNA upstream 24997 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA upstream 24997 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA upstream 24997 12412221 ~ 12415046 (-) True fam110a
TU65587 other downstream 160500 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 214293 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 255077 12126886 ~ 12128425 (-) False G49083
TU65529 other downstream 255077 12126886 ~ 12128425 (-) True G49083
TU65448 other downstream 492456 11888941 ~ 11891046 (-) False srxn1
TU65659 other upstream 1757 12388981 ~ 12391671 (-) True fkbp1aa
TU65695 other upstream 32562 12419786 ~ 12438725 (-) False prickle3
TU66001 other upstream 865188 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1753156 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2144900 14532124 ~ 14534605 (-) True G49766

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020118 True 3480 mRNA 0.43 5 NC_007127.7 39159752 ~ 39168840 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_01224759_01234682.mRNA True 2687 mRNA 0.48 7 CI01000016 1224136 ~ 1234682 (-)