RNA id: XM_039802008.1


Basic Information

Item Value
RNA id XM_039802008.1
length 4593
RNA type mRNA
GC content 0.48
exon number 11
gene id prickle3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12415603 ~ 12439909 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACTTGGGCTGGAAATTGTCTTCTATCAGATTACCACTAGATGGAAGCAGATTGCTACTCATCTGAAATTAATTGCTAATGTAAAGGTCACTCTGTCCCATCAGCCAGGATTAAGAGTTAATAAGTAATTGCAAGAACATCAACATAGCTATGGTGTTTGCTCCAGTCTCTCATCAGTTTGATGGTGTTTAGATGTTATCAGGAATTATATCTTTTTACACACTCTGCCAGGATTTGTACTGACCTGCAGCATGCATCTGTGATGTGTCTAATCTCATTTGAAATGTTTCTATTTCAGACAGTTTGCATGCTGTCCCCCtctttcattttgagattacaTTGCGTTTGCGAAAATCCTTTCCTATTTTGCTCTCCTCTGTGCTGCTGCCTTTCAGTTGCAATGACCATTACAGTACACACTAGGCCCGCGTCATTTTAAAGACCTACAGTGGAATGATAATCCTTTGTTTGGGCTCATACTGACTTATTTTTAAACTAATTCCctatgttgttgttgctgctgctgctgttgctgtggCAGCCCGACTGCAATAataactccccccccccaaacacgtGTTCATATTTGCTCGTCtaaatatttatttagaaatatgtattaaaCCGACTCCTCCCATGCCCTGAATGTTTTCCCGATTTAACTATTAGAACCAGACTCTGCAGATAATACATAAAGACTAAACATGGTATAAATCAGAAAGTGTGAGGGATTTCTAACACAGAGTCGAGGGAGAAGGATTTGTATGTACAGCGGTTAACTTCTTGTAGCCTAGGTGAAATAAATGGCAAACTTTGGGACAGTTAACGCGGCCTGTGTTCAGGTTTATGGACAGGGGAGGTAAAGTTGGAGCTCTTCGTCAAGTTAGCCAGGTACAGTCTGTCAGGATGGCTGTTAAGCGCCTAGGCCTTCAATATAAAAGCAAGGATGTTATCCGTTTGAATTAAAAGAGTTTGCCAGTAACTATCTTGACCATTAAGATGGTgttatttgtatttatacaaaatgtaattGCTTTTAGTATAGGATTTACTTTGTCTCTGCTTACGAAATGccaaatatataattaataagtGTTTTACTTTGAAAGGTCAGCCCGAAGTCACATTTTTCAGTTAGGCTAGCTTGTCAGTTACCAAAGTAGCTAAGGGTTCAGGCGGAAGGAGGAGTCCGGGGCAATCTGGAGGGGACATCCATCATGTAGTTTGTTCAACACAGGCTGCGTGACTTAAAATTCAAGACCTCGGTGTTTCTTCCCTCCGTTTGTTCGTCTGAAAAcgcatttttgtgtttttaacatCTAACCGACACCATGTTTCTGCGCGGATCTAAAAAACGACGGTCGAGCCGCTCGcaggaggaagaggacccGGACAGAGGGCAGCCCTGTCTGCACTGTGGAGACCAGTGCCCCGGCTTCCGTGTCCATGGCTGGAGGAAGATCTGTGTACACTGCAAGTGTGTGCGAGAGGAGCATGCCGTGCGCTCGGTGCCAGGCCAGCTGGAAAAGATGATGACGAAGCTGGTGTCGGACTTCCAGAGACACTCCATCTCCGACGACGACTCGGGCTGTGCCTCCGAGGAGTACGCATGGGTCCCACCTGGGCTCAAGCCCGAACAGGTATACCAGTATTTCAGCTGCTTGCCAGAGGACAGGGTGCCTTATGTGAACAGTCCAGGGGAAAGATACCGAATCAAACAACTGCTGCACCAGCTTCCAACCCACGACAGTGAGTCCCAGTACTGTAACTCTCTGAacgaggaggagaagaaggagttGCGTTTGTTCAGTCagcagaggaaaagagaaagccTGGGCAGAGGCGTCGTCCGGCTCTTCCCAGTAACTATGACGGGAGCCATTTGCCAACAGtgtggcaggCAGATCTGCGGTGGAGACATAGCGGTGTTTGCCAGTCGGGCCGGACACAGCAGCTGTTGGCACCCTCAGTGTTTCCAGTGTTCCACCTGCAGTGAGCTCCTGGTCGATCTGATCTACTTCTTTCAGGAGGGACAGATCTACTGCGGCCGGCACCACGCTGAGAGGCTCAAGCCCCGCTGCCAGGCCTGCGATGAGGTGACTGTCTCACCGAGATCCCCAACCTGTCTCATAAACACTCCTCAACAttttttttttgttgttttttgctgcGCTAAgcgttttaattttttttttttgcgtcagCGTTACATCATGAGAGAGAGTCGACCATACTGCTGCTCCTGCTACGAGTCCATGTACGCAGAGTACTGCGATACCTGTGGAGAAAACATAGGTATCGATCAGGGCCAGATGACATATGAGGGTCAGCACTGGCACGCCGTGGAGTCGTGTTTCTGCTGCGCCCGCTGTCAACTGCCTCTGCTGGGGCGCCCTTTCCTCCCTCGAGGGGGGCTCATCTTCTGCTCCAGGGCCTGTTCTCTGGGCGAGGACCCCAATAACTCCGACTCGTGTGACTCGGCGCTGCCGAGCAAACCTCAGCACAGACGCTGTGACACAGCAGAGAAACCCCAGCAGCCGCAGTGCGGTTCTCCACTGCAGCCACAAGAGGGCACCAACCCTCCTATAACTCTTGGAAAAGACTGCATTCATACTGCAGTGGAAAACAGAGGTGTCCACTGCACTGCTCCGGTTCAAAACGGACTTCCTTTACCCAGTGGTCATCCTCATCCAAGAGGCTCGTACTCGCCTCTTCCCCACATCCATCTAGGAAATGGCTTAGGTCCATCTTGGCCCAGCGACCTTCCACATTACAGTTTACTGCCAGGGGACTCTGGTATTAAACCTCCTGTCGGGGATCTCCAGTTCCAGCGAGAGCGGAATGGAAATACTGGACTAACTGGTCTTAATTCAAGAGGAACCTCTACTGCTAAAGACTGTAGGAACTGGGTGGAAAGGACGAATCAAGTAATGCAAGTGTTTCCTCCTCAGAAAAACTCACACATCATTTCACCTGAGTCGCCTCCCCTCTTGCCCAACAACCCATCCGTCCTGCCACCTCCTCTGCCCGTTAAGTCCCGTGACTTAATGCCCCAAGACTCACCTCCACCAAACCTCCCCCAACCAGTGGACAGACCCGCTGATTCTCCACCCCCGCTGTCTCGCAGTGGCACAGCTCGGGTCAGCTTCAGAGAACCAATCAGCAGCAGCTACTCCGTCGATGAGGACGAGGATGAAGACGAGAATGAGGAGGAGCTGCGAGAGGGCGTGGAGAACCAGCAGGAGGAAGATGAGGTGGAGGGAGGTTTCGGAAGCAGGTTGCATCTACAGAAAGGCATCCCACCTCAAATGGATCTGCTGGATGGATCCTCCTATCACCAGCGGAGTCTGCGGCGAGGGTGGGGCCATTGCCGTATCCCCTCCGACCCTGCTCTCCACCCGGGCCCGGAGAGGCGCTCCCGACGCTCGCAGCCCGACCGGCCTCGGCTGGACACCCTGGACTggagaggggagaaagagagggatagCCAGGGCTCCGCCAACGGCTCCTCACTGACCCTCAAGCTGAGCCAGTACAAACACGAAGACTGCTCTACGTGCTCTTCATCCTCAGACTCGGAGGAAGAGGGCTTCTTCCTGGGACAGCCCATACCTCTCCCCCCGCAGCTCCGAAAGCAGCAACCTGAGGAGGgcaaagacagagagggagaagaggagagggaggtgcAGAGAGACTGGGGACTGAGAGGCAGCATAAGGCGGAGAAGAGCTCACAGCCTTGGTGCAAAGGACAAAGATAAAAACTGTGCTATCTCCTAACACCTAACATCAAAACACAGCATGTTACTTTCTAAATTATGGAAGAGAACTAATGGCCCTTCATTACTCTAGTATTCAAGCTGTTTTTCTGTTGGTAATGTAGATCCAACACACGTGCAGACTTTTCAGAAAGGTGAACCACAGCCATTGTTCCAAAGGAAGCACAATAAACCGCAGAAAAGTCATTACCTTTTACTTTACGATATTGACTTCTCATTGGTTGACCTTTTGAGATGTTACAGTGTGAGTATGTGGTTAGTGATGAATGTGGAGTGATTGTTGGTAACATTTATGTTTGGATTCTATAGAGATGACTCACTCCTGTGTCCGTGACCCTGAAGTGTAATGTTACCGCTTCTTAACATCGCCATCATTTACATATGCAAACTTGCAGTAGCACGTATGACCAGGAACAGACAGCTCATTCCTCCATTATGGTTTGTAAAAGGAATATTAAATATATGTTATTTTTAACTCTACCGTAACTACTTTTTTCTGTGCTCTTATGTGCAATTTGTATATGGCTGTAATATATTAGTTATGAATACTAATGGGCAAATTTATGGAATGGAGTATGACCAGCCTTGGCAGTTTTATGATTATCAAAGTATCACACAAAGGAGAATTTGAGTAAATTTTGGAGGTTAAATTTGCTGCGTGTGTTTAAACAAAATACTTCAAAATTTGTATATGTTCATGTCtttaatcaaattatttttatatatttggtGTAAGTCGCTgttctttcttatttttttaggTAAAAGGAAGAGATTATAATTTCCGTTTCTTTTATTGTGTCGGGCAACTTTA

Function

GO: NA

KEGG:

id description
K04511 PRICKLE; prickle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 28379 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 34818 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 38627 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 40041 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 42295 12371821 ~ 12373308 (-) True G49178
TU65777 lncRNA upstream 164971 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA upstream 220139 12660048 ~ 12661240 (-) False LOC120558434
XR_005639121.1 lncRNA upstream 220543 12660452 ~ 12661242 (-) False LOC120558434
TU65826 lncRNA upstream 260520 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 328911 12768820 ~ 12771419 (-) True G49372
XM_039801994.1 mRNA downstream 231 12412221 ~ 12415372 (-) False fam110a
XM_039801992.1 mRNA downstream 231 12412221 ~ 12415372 (-) False fam110a
XM_039801993.1 mRNA downstream 557 12412221 ~ 12415046 (-) True fam110a
XM_039800420.1 mRNA downstream 5455 12392255 ~ 12410148 (-) True mfsd2al2
XM_039799419.1 mRNA downstream 23926 12389003 ~ 12391677 (-) False fkbp1aa
XM_039802007.1 mRNA upstream 108 12440017 ~ 12449668 (-) True plp2
XM_039802011.1 mRNA upstream 12578 12452487 ~ 12468003 (-) True sypb
XM_039802010.1 mRNA upstream 28791 12468700 ~ 12493767 (-) False LOC120559913
XM_039802009.1 mRNA upstream 28791 12468700 ~ 12493767 (-) True LOC120559913
XM_039800034.1 mRNA upstream 54096 12494005 ~ 12499465 (-) True timm17b
TU65659 other downstream 23932 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 192601 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 246394 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 287178 12126886 ~ 12128425 (-) False G49083
TU66001 other upstream 812503 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1700471 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 2092215 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2405429 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2405429 14845338 ~ 14853817 (-) False G49845

Expression Profile