RNA id: TU65777


Basic Information

Item Value
RNA id TU65777
length 1410
lncRNA type sense_over
GC content 0.48
exon number 5
gene id LOC120558434
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12604880 ~ 12661242 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTGCTCTTTCTCGAAGGGGCCCCAGTGACAGAGCCATTCACAAGCACGGGCCATAAATGACCGAGTTGAACACCACATTAAGCACTGCATTCTCAGAAATCTGAACTGACTGGAGCACAGCCAAAATGCCAGGAACAAAAGGTAATAAGTCGGACAAGAAGTCAGCTACCAAGCAACCTCAGAGTCCTAAAGAGCAGCCGAAGAAAGCTGATCAGAAAGGAGATGATAACAAGAAGCAAGGAGGACAGCCGAAGGGAGAGAAGCAATAACTTCCAGGCATTTGTGAAGATGGCTTTGGAGACACTGCTTGGGTCCTGCCGTCGTAAACATGGGAGCCCCCGGGGCAAACAGGGCTGAGTGCACCTTCCTTCTGCACTTTCCGAGCCTGCAGACTAGGCTGTTGTGCAGCCTTATAATACAGCATCTGCTCACCTCTCACAGAGGCAGAAAGTGAACCTGATCTCCATCCATCACCATCTGTTGTTCAACCCACCCTCCCAACCTTTTTCTGCCCCCTTCCCCACACTGTCCACTCTGGCTTATTAGATGCTCAAAAATAGACTCCAGGTTAAACCGGACCATTGCTTTGAgcgaaaaaataattttgtcaTCCCATTGCAATCCTTCCCTAACTCACCCTCATGCCACGATCGACTGTCTAACAGTCCATACATCCTTcttgtaaataataattaaaacaacTATTTCTTACCGCAaaaaaaaaaaaaaaacctgcggCAGCTGAAATGTTGTATGGTTTGACTGGTTTGTCTTACCTTTGTTCTAGGCAGATCTGTGCTTTCTCCTCCCAACGTTCTGCAATTGTGAGCAGCTCCTGAAGCTCTGCCATGGCCGTCTCCACAGACACACTCTGGGGCACGTTGCAGCCGGCTTCCATCAGGTTTCTCAAAACATCCAACATCACCTCCTGCCTCTCCCCTCCTTCTGTGCCCAGGGTGCGTCTCACCTCTGCCAGCCAATGGCCCTGCTCCTTAAGGCCCTGGAGTAAATTATACTCTGGCACCACAACAAGCAGCTTGGCCCCCTGCTCCAACAAAGTCTGCAACTGCTCAGGTGTTTGAGAGTCCCTCCTCCAGTCCCTGTCATTGGCCAGTACTTGAGCCCGGCTCTGGAAATCCTCCACTGTCCGCAGAACCGCCTTGAAAACCAGATGGTACAGAGGTAGACCGTCAGTGCACCAAGTGGGGGTACAACTTTTAAGGTGAGAAAATTGTAACACATTTATACagtgtttttattagttttggaaggatatgacaaaaataaaagctAGTTTGCTTAGTGTAACATAACCACTTACCTGCACTTCCTCCAACTGGCTGATCACACAGGGCAGGTTTTGCATCGTCTCTACCAAGGATTTCAGCTCTGCCAACGTCATCTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65658 lncRNA downstream 217656 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 224095 12376979 ~ 12380785 (-) True G49180
TU65654 lncRNA downstream 227904 12376288 ~ 12376976 (-) True G49179
TU65652 lncRNA downstream 229318 12375337 ~ 12375562 (-) True G49177
TU65653 lncRNA downstream 231572 12371821 ~ 12373308 (-) True G49178
TU65826 lncRNA upstream 39189 12700429 ~ 12704105 (-) True G49307
TU65916 lncRNA upstream 107580 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 114677 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 176280 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 259761 12921001 ~ 12924328 (-) True G49407
XM_039800029.1 mRNA downstream 93308 12504401 ~ 12511572 (-) False gpkow
XM_039800028.1 mRNA downstream 93308 12504401 ~ 12511572 (-) True gpkow
XM_039800034.1 mRNA downstream 105415 12494005 ~ 12499465 (-) True timm17b
XM_039802010.1 mRNA downstream 111113 12468700 ~ 12493767 (-) False LOC120559913
XM_039802009.1 mRNA downstream 111113 12468700 ~ 12493767 (-) True LOC120559913
XM_039799439.1 mRNA upstream 13147 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA upstream 13147 12674387 ~ 12678575 (-) False LOC120558433
XM_039799435.1 mRNA upstream 24046 12685286 ~ 12697057 (-) False LOC120558430
XM_039799433.1 mRNA upstream 24046 12685286 ~ 12697057 (-) True LOC120558430
XM_039801820.1 mRNA upstream 60814 12722054 ~ 12728769 (-) True wasb
TU65695 other downstream 166155 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 213209 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 381878 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 435671 12149794 ~ 12169209 (-) False dnmt3ba
TU65528 other downstream 476455 12126886 ~ 12128425 (-) False G49083
TU66001 other upstream 591172 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1479140 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1870884 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2184098 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2184098 14845338 ~ 14853817 (-) False G49845

Expression Profile