RNA id: TU65826


Basic Information

Item Value
RNA id TU65826
length 2208
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G49307
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12700429 ~ 12704105 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aGTCAGAGACAGCTAGTTCAAACAACTGCCTATTTTATTAGGTCAAAAGGTGGACATTTATCTTTAAGCAAACAAAATGAACCAAAGCAACAAACAAGTAGGTATCTTTAAACTACAGTGTTctataaaacacagcacacaaaatATAACTTTCTGGTTAtgttgatgaaaaaaaactCTCCAGATTATTTGATAAATTTATCCATGGATTAAACACGTGTACTTGTCTTATCCAAAAGACAATGCTGAAATATTTACAGGTCATTGCTAAGAAAAGTAAGCAAATACAAATACTAGTTTTGTTACAGTGCACCCCATAATGTTGCTGTGAATTTAATGACATTTACCGACACTGTGCACAGAAAAAGCCTTGGAAGTGATGGAATCATCCTGTCTTTAACAGTTCATGCTCACAGGCATGCCGACTGTGGACGCGTAGAAAAACGTGTAATAAATACCATCTTTTTAAAAAGAAGATAACACAAACCTTAAAACACATTACGTGAAAACTAATGTTTTAGAAAGCAATTTCAAATTAAGttttaagggggaaaaaatacaaaactcAGCTATTTATTGTAGGAGCATGTTACAAAATGGTGGAATCTACAGAAATGTTCAAACTACGCCATGATTTTAAACATCAGAGATGGTTTAAAGATTAACAGGGGTGGAGGTTGGTGTGTAACAAGACTGAACATAGATGTAGAAGGAAAAACACAGGTAGCATATTAAAACATTTGTTCCTATTTACTACAGTAGAGTACACGTTTCCTTATACACAGCCAACCATAACCAGAGTGTAAATGTCTGAAGATCAGTAAGGTTCTTCCAATAAAACTACAACCATGATCATCCCTGAGAGCGGATTTTGGTTCAGTACTGTGCATCTGAAATGTACTGTCATTATAATTATCAATTTaacttgacattttttttgtcttgtcaaTTCTACAAACAGCCAAAACTTTGCCTTGAAATAATCACGTAAtaatgtagggctgcaactaacgattatttttcatagtcgattagcTCATTGGTCTAGAAAATGCTGATCAgcgttttccaaagcccaagataacGGCTGCAAATGTCTAGTTTTGTTCACAACTCAAAAGATTTTCAGTTTATTGTCACAGAGGCGTGAATAACCTATAAGCTAGAATAAAATGTTTACCTTTTAATAAAAagatgactcaaaccgatttaatcgattatcaaaatagttggcgaatAATTGAATCGATCAATCTTTGTAGCTCTAAAATAACGCTACTGAAGGTTTCTACATTAATTTGAAGATTTTGCATTGCAAAATGTTATGCCAACAAGTAGCGGCAATCCTGATCTCACCTACATGTGTGCAGGCTGTTGTACAATGTTCCTCACTAAATAGAAGAAAACACTACTTGTATGAAGTGACTGGCATAATATGCCCAAGAActggtttagaaaaagaaaagaaaaaacatttagcaaaaaGTGAATCAGAATACACAGTCCCGACTGTATAAAATTGAGGGGAAACCATGCCACCTTGactttattattacatttaaccCTGATTTAAAATGCTCCTTTGTATTTTAggtataaaacaacaaaaactgatATTATGTGCATAAAAATGACATTGCTCTGGTACTCTTCGTCAACCTAGGccttttcttcatcttcttgGTCTCTGGTCCCTTGAGGACTCGTCTTCTTCTTTGACATAAACCTCTTcaggcctcctcctcctcttcctgctcaCTGTCATCAGAGCCAGCGCTTggccccctctcctcctcctcctcttcttcttcttcttcttcctcctcctcctcctcttcatcatcctcGTCTTCCTCCTCCCTGCTGTGGCCTTGTTCCGCCTGACCAGCTTCCTCACCGGGTTCATCGTCTGAGTCGGAGATTACTACACACTCGCCTCCATTACCGTTGTCAGCTGCTCTGGCCCCGCTGCCACCACTGCCGTTCTCCCTGGGTTCCCAGAGTGGAGTGAGGTAGTATCTCAGAGGGTCTCTGTACAGGTCGTCCTTAAGTATCTGTGCTACATCATCTTGTCCTGGGTTGCTATGGTCACTGAACCAGCTAAAAAAGGTCTGGTAGACCCCACGCGACGACTTCCTGGGTTCGCTGTGGGCCGTCAGGTTCTGTCCACGATGCCACAGGATGGGGTTGGAGAAGGACATGGGCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639121.1 lncRNA downstream 39187 12660452 ~ 12661242 (-) False LOC120558434
TU65777 lncRNA downstream 39189 12604880 ~ 12661240 (-) True LOC120558434
TU65778 lncRNA downstream 39189 12660048 ~ 12661240 (-) False LOC120558434
TU65658 lncRNA downstream 313205 12383502 ~ 12387224 (-) True G49183
TU65655 lncRNA downstream 319644 12376979 ~ 12380785 (-) True G49180
TU65916 lncRNA upstream 64715 12768820 ~ 12771419 (-) True G49372
TU65921 lncRNA upstream 71812 12775917 ~ 12779320 (-) True G49374
TU65931 lncRNA upstream 133415 12837520 ~ 12839132 (-) True G49384
TU65959 lncRNA upstream 216896 12921001 ~ 12924328 (-) True G49407
TU65973 lncRNA upstream 502262 13206367 ~ 13221242 (-) False camta1a
XM_039799435.1 mRNA downstream 3372 12685286 ~ 12697057 (-) False LOC120558430
XM_039799433.1 mRNA downstream 3372 12685286 ~ 12697057 (-) True LOC120558430
XM_039799439.1 mRNA downstream 20764 12674387 ~ 12679665 (-) True LOC120558433
XM_039799440.1 mRNA downstream 21854 12674387 ~ 12678575 (-) False LOC120558433
XM_039800100.1 mRNA downstream 64879 12614941 ~ 12635550 (-) False LOC120558830
XM_039801820.1 mRNA upstream 17949 12722054 ~ 12728769 (-) True wasb
XM_039801822.1 mRNA upstream 25287 12729392 ~ 12739824 (-) False LOC120559801
XM_039801821.1 mRNA upstream 25287 12729392 ~ 12738587 (-) True LOC120559801
XM_039801824.1 mRNA upstream 25287 12729392 ~ 12735973 (-) False LOC120559801
XM_039801819.1 mRNA upstream 36636 12740741 ~ 12744322 (-) True apex2
TU65695 other downstream 261704 12419786 ~ 12438725 (-) False prickle3
TU65659 other downstream 308758 12388981 ~ 12391671 (-) True fkbp1aa
TU65587 other downstream 477427 12220737 ~ 12223002 (-) False ppdpfa
XR_005639172.1 other downstream 531220 12149794 ~ 12169209 (-) False dnmt3ba
TU65529 other downstream 572004 12126886 ~ 12128425 (-) True G49083
TU66001 other upstream 548307 13252412 ~ 13253472 (-) False LOC120558587
XR_005639168.1 other upstream 1436275 14140380 ~ 14145222 (-) False LOC120558710
TU66513 other upstream 1828019 14532124 ~ 14534605 (-) True G49766
TU66613 other upstream 2141233 14845338 ~ 14853817 (-) False G49845
TU66615 other upstream 2141233 14845338 ~ 14853817 (-) False G49845

Expression Profile